View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3484_low_3 (Length: 472)
Name: NF3484_low_3
Description: NF3484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3484_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 37545362 - 37544897
Alignment:
| Q |
1 |
actccataaacaaatctcttatttcattcggcattcagttactaacaaa----gtaacaccttttaattgtgtttagaataagactcatgcatatcgtgg |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37545362 |
actccataaacaaatctcttatttcattcggcattcagttacttatgaatcttgtaacaccttttaattgtgtttaagataagactcatgcatatcgtgg |
37545263 |
T |
|
| Q |
97 |
tttcaaccattacataaaggttcatcattcaaccataatttattaaagtttagatacacatgataataataaacaaatggttttatcttaaaacttgttt |
196 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37545262 |
tttcaaccattacataaaggttcatcattcaatcataatctattaaagtttagatacacatgataataataaacaaagtgttttatcttaaaacttgttt |
37545163 |
T |
|
| Q |
197 |
tcaatttcaagcctttaaaaatgttaccttatggttgttggatcacaccttgaacctcagaggcgttaaagtcggatccttcacttatgggtgaaa---- |
292 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37545162 |
tcaatttcaagcatttaaaaatgttaccttatggttgttggatcacactttgaacctcagaggcgttaaagtcggatccttcacttatgggtgaaactag |
37545063 |
T |
|
| Q |
293 |
--ttatatagataaacttaggttgcaaacatgcctcacacatgattctaattaatgcattgacaccatttgattggctatctatgcgccttgagcgtagg |
390 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| || |
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| T |
37545062 |
gtttatatagataaacttaggttgcaaacacgcctcacacatgattctaattaatgcattgacaccatttgattgactatttatgcgccttgagcgtggg |
37544963 |
T |
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| Q |
391 |
attatctgtcaacgcataatgatgagagattagggaattttgtgtcacatgtggctttatctcaca |
456 |
Q |
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| T |
37544962 |
attatctgccaatgcacaatgatgagagataagggaattttgtgtcacatgtggctttatctcaca |
37544897 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 1628661 - 1628730
Alignment:
| Q |
93 |
gtggtttcaaccattacataaaggttcatcattcaaccataatttattaaagtttagatacacatgataa |
162 |
Q |
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|||||| ||||||||||| ||| ||||||||||||| | |||||||| ||||||||| |||||||||||| |
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| T |
1628661 |
gtggttccaaccattacaaaaatgttcatcattcaatcctaatttatgaaagtttagttacacatgataa |
1628730 |
T |
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