View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3484_low_6 (Length: 337)
Name: NF3484_low_6
Description: NF3484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3484_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 42743415 - 42743749
Alignment:
| Q |
1 |
ctaaactctaagataaataagttgttattttcttaaaaatactaaggatcgcattgctactattaccataatttaaaaaatcttgattgcaagttaaaaa |
100 |
Q |
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| T |
42743415 |
ctaaactctaagataaataagttgttattttctcaaaaatactaaggatcgcattgctactattaccataatttaaaaaatcttgattgcaagttaaaaa |
42743514 |
T |
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| Q |
101 |
ctaaacacttcaattaaacaacaaaaatgaaatag----------------attatacttcctccataggatcctccaaacacaacaacaggggactcag |
184 |
Q |
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| T |
42743515 |
ctaaacacttcaattaaacaacaaaaatgaaatagaattttgataatatagattatacttcctccataggatcctccaaacacaacaacaggggactcag |
42743614 |
T |
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| Q |
185 |
ttgctgacaaatttttcttgaggtcaatgataagagtggcataatcagccaaagcttgtgcagaactaagatatccaagtgtactgctatttgcatatgc |
284 |
Q |
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| T |
42743615 |
ttgctgacaaatttttcttgaggtcaatgataagagtggcataatcagccaaagcttgtgcagaactaagatatccaagtgtactgctatttgcatatgc |
42743714 |
T |
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| Q |
285 |
aaccttcttcttgcctccaaatggaattgattttc |
319 |
Q |
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| T |
42743715 |
aaccttcttcttgcctccaaatggaattgattttc |
42743749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 138 - 319
Target Start/End: Original strand, 42748045 - 42748226
Alignment:
| Q |
138 |
tatacttcctccataggatcctccaaacacaacaacaggggactcagttgctgacaaatttttcttgaggtcaatgataagagtggcataatcagccaaa |
237 |
Q |
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| T |
42748045 |
tatacttccaccataggatcctccaaacacgacaacaggggaatcagttgctgataaattcttcttcagatcaattatgagtgtggcataatcagctaaa |
42748144 |
T |
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| Q |
238 |
gcttgtgcagaactaagatatccaagtgtactgctatttgcatatgcaaccttcttc-ttgcctccaaatggaattgattttc |
319 |
Q |
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| T |
42748145 |
gcctgtgtggaactcatatatccaagtgtgctgctagttttatttgcaa-cttcatcatttcctccaaatggtattgattttc |
42748226 |
T |
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