View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3484_low_8 (Length: 303)
Name: NF3484_low_8
Description: NF3484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3484_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 32500665 - 32500475
Alignment:
| Q |
11 |
atgaagcagtaaagatacaatatggaaattaaaggaacgaacatgacnnnnnnnnggtggaaattgaaggtcattttcttgttgaaattaactaccaagt |
110 |
Q |
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| T |
32500665 |
atgaagcagtaaagatacaatatggaaattaaaggaacgaacatgaaaaaaaaaaggtggaaattgaaggtcattttcttgttgaaattaactaccaagt |
32500566 |
T |
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| Q |
111 |
tggttcaaaagtctttcgtggtaaaacttcattgtaatatgatagtagtttttaagtcccacatccgtatattgagagaaaaatacagcaa |
201 |
Q |
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| T |
32500565 |
tggttcaaaagtctttcgtggtaaaacttcattgtaatatgatagtagtttttaagtcccacatccgtatattgagagaaaaatacagcaa |
32500475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 32500405 - 32500320
Alignment:
| Q |
202 |
ttaggaactagttttcttccattaactatattgtgcatatgcttttgtaattgtgttggttatgttattaattattaatttgtaag |
287 |
Q |
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| T |
32500405 |
ttaggaactagttttcttccattaactatattgtgcatatgcttttgtaattgtgttggttatgttattagttattaatttgtaag |
32500320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 32504447 - 32504378
Alignment:
| Q |
129 |
tggtaaaacttcattgtaatatgatagtagtttttaagtcccacatccgtatattgagagaaaaatacag |
198 |
Q |
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| T |
32504447 |
tggtaaaacttcattgtaatatggtagtagtttttaagtcccacatcggcacatccagagaaaaatacag |
32504378 |
T |
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