View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_high_11 (Length: 437)
Name: NF3485_high_11
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_high_11 |
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| [»] chr6 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 15 - 437
Target Start/End: Complemental strand, 31939362 - 31938940
Alignment:
| Q |
15 |
agtatttagagacaaggatggctgaatgttcagtcttcccttccattttgaggtttgaatctgttccttccaattccttaaccaactattataactacct |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31939362 |
agtatttagagacaaggatggctgaatgttcagtcttcccttccattttgagattggaatctgttccttccaattccttaaccaactattataactacct |
31939263 |
T |
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| Q |
115 |
tccatatttattactaaattgcgcaactgctcaataactttcctgatggatcagtccagaactttttaggtgtaatatttcttattggtctaacaatatg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31939262 |
tccatatttattactaaattgcgcaactgctcaataactttcctgatggatcagtccagaactttttaggtgtaatatttcttattggtctaacaatatg |
31939163 |
T |
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| Q |
215 |
gttagaaagattgctaaatgtagaatactaaagtagttatagtttgagattagttagtaacattttctatctttcattataannnnnnnnnnccattatt |
314 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| |
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| T |
31939162 |
gttagaaagattgctaaatgtagaagactaaagtagttatagtttgagattagttagtgacatattctatctttcattataa-tttttttttccattatt |
31939064 |
T |
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| Q |
315 |
atgtatagcatgacactcaatag-ttccatctttaatgcaggtatattcaagttggaaacgcagttgctgttcctgtggcccttgcccttggatacacat |
413 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31939063 |
atgtatagcatgacactcaatagtttccatctttaatgcaggtatattcaagttggaaacgcagttgctgttcctgtggcccttgcccttggatacacat |
31938964 |
T |
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| Q |
414 |
taggtttagcaattctaggactct |
437 |
Q |
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| T |
31938963 |
taggtttagcaattctaggactct |
31938940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 348 - 435
Target Start/End: Complemental strand, 13535667 - 13535580
Alignment:
| Q |
348 |
aatgcaggtatattcaagttggaaacgcagttgctgttcctgtggcccttgcccttggatacacattaggtttagcaattctaggact |
435 |
Q |
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| T |
13535667 |
aatgcaggtatactcaagttggaaatgcggtcgctgttccggtagcccttgcccttggatacacattaggtttggctattctaggact |
13535580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 437
Target Start/End: Complemental strand, 9389731 - 9389293
Alignment:
| Q |
15 |
agtatttagagacaaggatggctgaatgttcagtcttcccttccattttgaggtttgaatctgttccttccaattccttaaccaac-------------- |
100 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
9389731 |
agtatttagagacaaggatgactgaatgttcagccttcccttccattttgagataggaatctgttccttccaattccttaaccaataactgattaaccta |
9389632 |
T |
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| Q |
101 |
-tattataactaccttccatatttattactaaattgcgcaactgctcaataactttcctgatggatcagtccagaactttttaggtgtaatatttcttat |
199 |
Q |
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||||||||||| |||||||||||||||||||||||| |||||| ||||||||| |||| | |||||||| ||||||||||||||||||||||||||||| |
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| T |
9389631 |
ttattataactaacttccatatttattactaaattgcacaactgttcaataactctcctaagggatcagttcagaactttttaggtgtaatatttcttat |
9389532 |
T |
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| Q |
200 |
tggtctaacaatatggttagaaagattgctaaatgtagaatactaaagtagttatagtttgagattagttagtaacattttctatctttcattata--an |
297 |
Q |
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| T |
9389531 |
tggtctaacattatggttagaaagattgctaaatgtagaagactaaactagttata-agtgagattagttagtaacattttctatctttcattatatttt |
9389433 |
T |
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| Q |
298 |
nnnnnnnnnccattattatgtatagcatgacactcaatagttccatctttaatgcaggtatattcaagttggaaacgcagttgctgttcctgtggccctt |
397 |
Q |
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| T |
9389432 |
tttttcttcccattattatgtattgcatggcactcaatagtttcatctttaatgcaggtacatgcaagttggaaacgcagttgctgttcctgtggccctt |
9389333 |
T |
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| Q |
398 |
gcccttggatacacattaggtttagcaattctaggactct |
437 |
Q |
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| T |
9389332 |
gcccttggatacacattaggtttagcaattctaggactct |
9389293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 1337545 - 1337112
Alignment:
| Q |
19 |
tttagagacaaggatggctgaatgttcagtcttcccttccattttgaggtttgaatctgttccttccaattccttaaccaa------------ctattat |
106 |
Q |
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|||| ||||||||| |||||||||||||||||||| ||||||||||| || |||| |||||||||||||||||||||||| ||||||| |
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| T |
1337545 |
tttaaagacaaggacggctgaatgttcagtcttcc-ttccattttgaaattggaatatgttccttccaattccttaaccaaaaactgattaacctattat |
1337447 |
T |
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| Q |
107 |
aactaccttccatatttattactaaattgcgcaac---tgctcaataactttcctgatggatcagtccagaactttttaggtgtaatatttcttattggt |
203 |
Q |
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|| || |||||||||||||||||||||||| |||| |||||||||||| | || | |||||||||||||| |||||||||||||||||||||||||| |
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| T |
1337446 |
aattaacttccatatttattactaaattgcacaacaattgctcaataactcttcttagggatcagtccagaa-tttttaggtgtaatatttcttattgga |
1337348 |
T |
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| Q |
204 |
ctaacaatatggttagaaagattgctaaatgtagaatactaaagtagttatagtttgagattagttagtaacattttctatctttcattataa-----nn |
298 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| |
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| T |
1337347 |
ctaataatatggttagaaagattgctaaatgtagaagactaaagtagttatagtttgagtttagtcagtaacattttctatcttt--gtataactttttg |
1337250 |
T |
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| Q |
299 |
nnnnnnnnccattattatgtatagcatgacactcaatagttccatctttaa--tgcaggtatattcaagttggaaacgcagttgctgttcctgtggccct |
396 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
1337249 |
tcttctttccattattatgtatagcatggcactcaatagttccatctttaatgtgcaggtacatgcaagttggaaacgcagttgctgttcctgttgccct |
1337150 |
T |
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| Q |
397 |
tgcccttggatacacattaggtttagcaattctaggac |
434 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |
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| T |
1337149 |
tgcccttggatacacattaggtttggcaattctaggac |
1337112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 342 - 434
Target Start/End: Complemental strand, 5639295 - 5639203
Alignment:
| Q |
342 |
atctttaatgcaggtatattcaagttggaaacgcagttgctgttcctgtggcccttgcccttggatacacattaggtttagcaattctaggac |
434 |
Q |
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|||||||||||||||| || ||||||||||| || |||||||||||||||| |||||||| ||||||||||| ||||||||| ||| ||||| |
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| T |
5639295 |
atctttaatgcaggtacatacaagttggaaatgcggttgctgttcctgtgggtcttgccctcggatacacattgggtttagcacttcaaggac |
5639203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 5639400 - 5639335
Alignment:
| Q |
171 |
cagaactttttaggtgtaatatttcttattggtctaacaatatggtt-agaaagattgctaaatgta |
236 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| || || |||||| |||||||||||| |
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| T |
5639400 |
cagaactttttaggtgtgatatttcttattggtctaacaat-tgtttaagaaaggttgctaaatgta |
5639335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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