View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_high_13 (Length: 429)
Name: NF3485_high_13
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 411
Target Start/End: Complemental strand, 34759443 - 34759045
Alignment:
| Q |
13 |
aaaatactatcacaatttggaagtgcgtagccaaacacgtttagggtttgatagaacaaaacaagtacctttgtactctaatcaacatactaataggaat |
112 |
Q |
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| T |
34759443 |
aaaatactaccacaagttggaagtgcgtagccaaacacttttagggtttgatagaacaaaacaagcacctttgtactctaatcaacatactaataggaat |
34759344 |
T |
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| Q |
113 |
ttggatatttgtcccatggcatccaagaccaagttgatgaggcatcattagcagaaagatacaagctctggatgacacaatatggaaaggtctgcaagga |
212 |
Q |
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| T |
34759343 |
ttggatatttgtcccatggcatccaagaccaagttgatgatgcatcattagcagaaagatacaagctctggatgacataatatggaaaggtctgcaagga |
34759244 |
T |
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| Q |
213 |
tgatgtagagcacgaaaaacacttccaaatattcaaacacaatgtggcctccattgaatcctcaatattgcagggaaaaaactatacaaacttggcatta |
312 |
Q |
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| T |
34759243 |
tgatgtagagcacgaaaaacacttccaaatattcaaacacaatgtggcctccattgaatcctcaatattgcagggaaaaaactatacaaacttggcatta |
34759144 |
T |
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| Q |
313 |
tttgcagaccaacccattggggcttccgatgatgggttcaagggagttaaaggaaattgtaagaatgcgtgtcaccaagtttggattaagagctataag |
411 |
Q |
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| T |
34759143 |
tttgcagaccaacccattggggcttccgatgatgggttcaagggagttaaaggaaattgtaagaatgtgtgtcaccaagtttggattaagagctataag |
34759045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 312
Target Start/End: Complemental strand, 29734122 - 29733989
Alignment:
| Q |
180 |
ctggatgacacaatatggaaaggtctgcaaggatgatgtagagcacgaaaaacacttccaaatattcaaacacaatgtggcctccattgaat-cctcaat |
278 |
Q |
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| T |
29734122 |
ctggaagacaaaatatggagttgtctacaaggatgttgcagaacagaaaaaacactttcaaatattcaaacacaatgtggcctacattgattacttcaat |
29734023 |
T |
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| Q |
279 |
attgcagggaaaaaactatacaaacttggcatta |
312 |
Q |
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| T |
29734022 |
gctgcagggaacaaaccctacaaacttgccatta |
29733989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 30057175 - 30057108
Alignment:
| Q |
207 |
caaggatgatgtagagcacgaaaaacacttccaaatattcaaacacaatgtggcctccattgaatcct |
274 |
Q |
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| T |
30057175 |
caaggatgatgcagaggaggaaaagcacatccaaatattcaaacacaatgttgcctacattgattcct |
30057108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 29607022 - 29606976
Alignment:
| Q |
227 |
aaaaacacttccaaatattcaaacacaatgtggcctccattgaatcc |
273 |
Q |
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| T |
29607022 |
aaaaacacttccaaatattcaaacacaatgtgatctacattgaatcc |
29606976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 29746146 - 29746214
Alignment:
| Q |
227 |
aaaaacacttccaaatattcaaacacaatgtggcctccattgaatcc-tcaatattgcagggaaaaaac |
294 |
Q |
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||||||||||| |||||||||||||||||||| || |||||||||| ||||| ||||||||| |||| |
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| T |
29746146 |
aaaaacacttcgaaatattcaaacacaatgtgatctacattgaatccttcaatgctgcagggaacaaac |
29746214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 116
Target Start/End: Complemental strand, 30057306 - 30057271
Alignment:
| Q |
81 |
ctttgtactctaatcaacatactaataggaatttgg |
116 |
Q |
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| T |
30057306 |
ctttgtactctaatcaacatactaatagtaatttgg |
30057271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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