View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_high_15 (Length: 397)
Name: NF3485_high_15
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 386
Target Start/End: Original strand, 35409709 - 35410080
Alignment:
| Q |
15 |
aatggggtggcgaggtggtgaactcacgaaccgacggccgacacacctccactcagatgggttccggccactttgccgaggatggtttcggaaaagcaag |
114 |
Q |
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| T |
35409709 |
aatggggtggcgaggtggtgaactcacggaccgacggccgacacacctccactcagatgggttccggccactttgccgaggatggtttcggaaaagcaag |
35409808 |
T |
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| Q |
115 |
ctactttcggaaccttgagattgtggacattgataacactcttagctcagtacaaagcatctcaaccttggctgaaaatacaaattgttatgatattcaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409809 |
ctactttcggaaccttgagattgtggacattgataacactcttagctcagtacaaagcatctcaaccttggctgaaaatacaaattgttatgatattcaa |
35409908 |
T |
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| Q |
215 |
aactcctatagcaacgaatggggcacatacttctattatggtgggcctgggaataatcctaagtgtccatgatttttagttgacgtacatataaattcaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409909 |
aactcctatagcaacgaatggggcacatacttctattatggtgggcctgggaataatcctaagtgtccatgatttttagttgacgtacatataaattcaa |
35410008 |
T |
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| Q |
315 |
ttggacacgtatagtttggtttcaaatttgtcccacgtcgaagtaatgtcttctagtttttgttacattctt |
386 |
Q |
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| T |
35410009 |
ttggacacgtatagtttggtttcaaatttgtcccacgtctaagtaatgtcttctagttcttgttacattctt |
35410080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 48017990 - 48017869
Alignment:
| Q |
14 |
caatggggtggcgaggtggtgaactcacgaaccgacggccgacacacctccactcagatgggttccggccactttgccgaggatggtttcggaaaagcaa |
113 |
Q |
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||||||||||||||||| |||||| || || | |||| ||||||||||||||| |||||||||||||||||||| || ||||| || |||||||||| |
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| T |
48017990 |
caatggggtggcgaggtagtgaacagtcgcgccaatggccaacacacctccactcaaatgggttccggccactttgctgaagatggctttggaaaagcaa |
48017891 |
T |
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| Q |
114 |
gctactttcggaaccttgagat |
135 |
Q |
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||||||| ||||||||||||| |
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| T |
48017890 |
gctacttcaggaaccttgagat |
48017869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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