View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3485_high_16 (Length: 395)

Name: NF3485_high_16
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3485_high_16
NF3485_high_16
[»] chr5 (5 HSPs)
chr5 (5-387)||(15474208-15474590)
chr5 (5-131)||(15466065-15466192)
chr5 (241-354)||(20269469-20269583)
chr5 (242-349)||(22398073-22398181)
chr5 (294-351)||(28351025-28351082)
[»] chr4 (2 HSPs)
chr4 (218-351)||(38562130-38562264)
chr4 (294-342)||(38562137-38562185)
[»] chr1 (6 HSPs)
chr1 (294-358)||(1609959-1610023)
chr1 (294-359)||(24419614-24419679)
chr1 (324-358)||(20814858-20814892)
chr1 (294-351)||(35489199-35489256)
chr1 (300-348)||(11900915-11900963)
chr1 (294-342)||(49166689-49166737)
[»] chr7 (3 HSPs)
chr7 (281-358)||(2635665-2635742)
chr7 (294-352)||(17801463-17801521)
chr7 (294-358)||(15996197-15996261)
[»] chr6 (2 HSPs)
chr6 (294-348)||(5069945-5069999)
chr6 (294-346)||(24252962-24253014)
[»] chr8 (1 HSPs)
chr8 (300-351)||(40223309-40223360)
[»] chr3 (1 HSPs)
chr3 (327-361)||(50561050-50561084)
[»] chr2 (1 HSPs)
chr2 (295-360)||(11564994-11565059)


Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 5 - 387
Target Start/End: Original strand, 15474208 - 15474590
Alignment:
Q  5 cctttgtctcctttgattcttccatctaagtaagcagaaggaaccattggaccaatcaatttagcaggaaacatctcagttagccctttcacaaccttca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15474208 cctttgtctcctttgattcttccatctaagtaagcagaaggaaccattggaccaatcaatttagcaggaaacatctcagttagccctttcacaaccttca 15474307  T
Q  105 atacaaaaagaaaattgttaatcatcaattcatcgtcaactaaaattcataagagaaacattggtccattaaaattaaccaaatatcaaatattttagtc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  15474308 atacaaaaagaaaattgttaatcatcaattcatcgtcaactaaaattcataagagaaagattggtccataaaaattaaccaaatatcaaatattttagtc 15474407  T
Q  205 atggatggaaaaccggtcacatttataagnnnnnnncaactttttagatacattgaatagttatttatatgatctgtaaatataaccacatacaataatt 304  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  15474408 atggatggaaaaccggtcacatttataagaaaaaaataactttttagatacattgaatagttatttatatgatctgtaaatataacccgatacgataatt 15474507  T
Q  305 attcaatgtttctacaaacttgttttttgcttataaatatgatcggaaagagtaataaaatgctaagaatttgtacctatgct 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15474508 attcaatgtttctacaaacttgttttttgcttataaatatgatcggaaagagtaataaaatgctaagaatttgtacctctgct 15474590  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 15466065 - 15466192
Alignment:
Q  5 cctttgtctcctttgattcttccatctaagtaagcagaaggaaccattggaccaatcaatttagcaggaaacatctcagttagccctttcacaacc-ttc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| | |||||||||||||||||||||| |||    
T  15466065 cctttgtctcctttgattcttccatctaagtaagcagaaggaaccattggaccaatcattttagctggaaaaagctcagttagccctttcacaacctttc 15466164  T
Q  104 aatacaaaaagaaaattgttaatcatca 131  Q
    ||||||||||||||||||||||| ||||    
T  15466165 aatacaaaaagaaaattgttaatgatca 15466192  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 354
Target Start/End: Original strand, 20269469 - 20269583
Alignment:
Q  241 caactttttagatacattgaatagtt-atttatatgatctgtaaatataaccacatacaataattattcaatgtttctacaaacttgttttttgcttata 339  Q
    |||||||||||||| |||||||| || || ||| ||| ||  |||||| || | ||||| |||||||||||||| |||| ||| |||||||||| |||||    
T  20269469 caactttttagatatattgaataattgatgtatctgacctacaaatatgacgaaatacattaattattcaatgtatctaaaaaattgttttttgtttata 20269568  T
Q  340 aatatgatcggaaag 354  Q
    ||| |||||||||||    
T  20269569 aatgtgatcggaaag 20269583  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 242 - 349
Target Start/End: Original strand, 22398073 - 22398181
Alignment:
Q  242 aactttttagatacattgaatagttatt-tatatgatctgtaaatataaccacatacaataattattcaatgtttctacaaacttgttttttgcttataa 340  Q
    ||||||||||||  |||||||| ||||| |||||  ||| ||||||| |||| ||||| |||||||||||||  |||| ||| |||| ||||  ||||||    
T  22398073 aactttttagatttattgaataattattgtatatagtctataaatatgaccaaatacattaattattcaatgaatctaaaaagttgtattttatttataa 22398172  T
Q  341 atatgatcg 349  Q
    |||||||||    
T  22398173 atatgatcg 22398181  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 28351025 - 28351082
Alignment:
Q  294 atacaataattattcaatgtttctacaaacttgttttttgcttataaatatgatcgga 351  Q
    ||||| || ||||||||||  |||| ||| ||||||||||||||||||||||| ||||    
T  28351025 atacattagttattcaatgaatctaaaaagttgttttttgcttataaatatgaccgga 28351082  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 351
Target Start/End: Original strand, 38562130 - 38562264
Alignment:
Q  218 cggtcacatttataagnnnnnnncaactttttagatacattgaatagttatt-tatatgatctgtaaatataaccacatacaataattattcaatgtttc 316  Q
    ||||||||||||||||       |||||| |||||||||||||||| ||| | ||||||  || ||||| | |||  ||||| |||||||||||||| ||    
T  38562130 cggtcacatttataagcaaaaaacaacttgttagatacattgaataattaatgtatatgtcctataaatgtgaccggatacattaattattcaatgtatc 38562229  T
Q  317 tacaaacttgttttttgcttataaatatgatcgga 351  Q
    || ||| ||||||||||||||||||| ||| ||||    
T  38562230 taaaaaattgttttttgcttataaatgtgaccgga 38562264  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 38562185 - 38562137
Alignment:
Q  294 atacaataattattcaatgtttctacaaacttgttttttgcttataaat 342  Q
    ||||| |||||||||||||| ||||  || |||||||||||||||||||    
T  38562185 atacattaattattcaatgtatctaacaagttgttttttgcttataaat 38562137  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 1610023 - 1609959
Alignment:
Q  294 atacaataattattcaatgtttctacaaacttgttttttgcttataaatatgatcggaaagagta 358  Q
    ||||| |||||||||||||| |||| ||| ||||||||||||||||||| |||||||| ||||||    
T  1610023 atacattaattattcaatgtatctaaaaagttgttttttgcttataaatgtgatcggatagagta 1609959  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 359
Target Start/End: Original strand, 24419614 - 24419679
Alignment:
Q  294 atacaataattattcaatgtttctacaaacttgttttttgcttataaatatgatcggaaagagtaa 359  Q
    ||||| ||||||||||||||  ||| ||| ||||||||||||||||||| ||| ||||| ||||||    
T  24419614 atacattaattattcaatgtacctaaaaagttgttttttgcttataaatgtgaccggaaggagtaa 24419679  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 358
Target Start/End: Original strand, 20814858 - 20814892
Alignment:
Q  324 ttgttttttgcttataaatatgatcggaaagagta 358  Q
    ||||||||||||||||||||||||||||| |||||    
T  20814858 ttgttttttgcttataaatatgatcggaaggagta 20814892  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 35489256 - 35489199
Alignment:
Q  294 atacaataattattcaatgtttctacaaacttgttttttgcttataaatatgatcgga 351  Q
    ||||| |||||||||||||| |||| ||| |||||||||| |||||||| ||| ||||    
T  35489256 atacattaattattcaatgtatctaaaaagttgttttttgattataaatgtgaccgga 35489199  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 11900915 - 11900963
Alignment:
Q  300 taattattcaatgtttctacaaacttgttttttgcttataaatatgatc 348  Q
    |||||||||||||| |||| ||| ||| |||||| ||||||||||||||    
T  11900915 taattattcaatgtatctaaaaagttggtttttgtttataaatatgatc 11900963  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 49166689 - 49166737
Alignment:
Q  294 atacaataattattcaatgtttctacaaacttgttttttgcttataaat 342  Q
    ||||| ||||||||||||||  ||| ||| |||||||||||||||||||    
T  49166689 atacattaattattcaatgtaactaaaaagttgttttttgcttataaat 49166737  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 358
Target Start/End: Original strand, 2635665 - 2635742
Alignment:
Q  281 taaatataaccacatacaataattattcaatgtttctacaaacttgttttttgcttataaatatgatcggaaagagta 358  Q
    ||||||| |||||||||| || ||||||||||| | || ||| ||||||||| |||||||||||||||| || |||||    
T  2635665 taaatatgaccacatacattagttattcaatgtatttaaaaaattgttttttacttataaatatgatcgaaatgagta 2635742  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 352
Target Start/End: Original strand, 17801463 - 17801521
Alignment:
Q  294 atacaataattattcaatgtttctacaaacttgttttttgcttataaatatgatcggaa 352  Q
    ||||| |||||||||||||  |||| ||| |||||||||| ||||||||||||| ||||    
T  17801463 atacattaattattcaatgaatctaaaaagttgttttttgattataaatatgattggaa 17801521  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 15996197 - 15996261
Alignment:
Q  294 atacaataattattcaatgtttctacaaacttgttttttgcttataaatatgatcggaaagagta 358  Q
    ||||| |||||||||||||| |||| |||  |||||||||||||| || |||  |||||||||||    
T  15996197 atacattaattattcaatgtatctaaaaaagtgttttttgcttatgaaaatggccggaaagagta 15996261  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 5069999 - 5069945
Alignment:
Q  294 atacaataattattcaatgtttctacaaacttgttttttgcttataaatatgatc 348  Q
    ||||| |||||||||||||| |||| ||| ||||||||||||||||||| |||||    
T  5069999 atacattaattattcaatgtatctaaaaagttgttttttgcttataaatgtgatc 5069945  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 24252962 - 24253014
Alignment:
Q  294 atacaataattattcaatgtttctacaaacttgttttttgcttataaatatga 346  Q
    ||||| ||||||||||||||  ||| ||| || ||||||||||||||||||||    
T  24252962 atacattaattattcaatgtacctaaaaagttattttttgcttataaatatga 24253014  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 40223309 - 40223360
Alignment:
Q  300 taattattcaatgtttctacaaacttgttttttgcttataaatatgatcgga 351  Q
    |||||||||||||| |||| ||  |||||||||||||||||| |||||||||    
T  40223309 taattattcaatgtatctaaaacgttgttttttgcttataaaaatgatcgga 40223360  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 50561084 - 50561050
Alignment:
Q  327 ttttttgcttataaatatgatcggaaagagtaata 361  Q
    ||||||||||||||||||||||||| |||||||||    
T  50561084 ttttttgcttataaatatgatcggagagagtaata 50561050  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 11565059 - 11564994
Alignment:
Q  295 tacaataattattcaatgtttctacaaacttgttttttgcttataaatatgatcggaaagagtaat 360  Q
    |||| |||||||||||||| |||| ||  ||||||||||||||||||| ||| ||||  |||||||    
T  11565059 tacattaattattcaatgtatctaaaatgttgttttttgcttataaatgtgaccggagggagtaat 11564994  T

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