View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3485_high_20 (Length: 346)
Name: NF3485_high_20
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_high_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 42577173 - 42576829
Alignment:
| Q |
1 |
gacgctaaggagtggctgaaacagagcaatgtaattatagcagc-taataactgttaaataatggtttaatggaagagaaacgtgattagt---gagaat |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42577173 |
gacgctaaggagtggctgaaacagagcaatgtaattatagcagaataataactgttaaataatggtttaatggaagagaaacgtgattagtagtgagaat |
42577074 |
T |
|
| Q |
97 |
gaaactaa---gtaattaacctggaaataagatctcggcaactgcggagatgacggatggaagagagtcgagagggaatggaagaagtgtggtggttagc |
193 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42577073 |
gaaactaataagtaattaacctggaaataagatctcggcaactgcggagatgacagatggaagagagtcgagagggaatggaagaagtgaggtggttagc |
42576974 |
T |
|
| Q |
194 |
agatgtagctgattccgccgccgccaaggaccgggtaatagaacgaagtgcgactctcgctgaattagatttccaactgctcgccattttcgtgatttgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
42576973 |
agatgtagctgattccgccgccgccaaggaccgggtaatagaacgaagtgcaactctcgctgaattagatttccaaatgcttgccattttcgtgatttgg |
42576874 |
T |
|
| Q |
294 |
cattctgagaccttctctgcaacggaaacccctttttcttcatct |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42576873 |
cattctgagaccttctctgcaacggaaacccctttttcttcatct |
42576829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 231 - 338
Target Start/End: Complemental strand, 42569894 - 42569784
Alignment:
| Q |
231 |
atagaacgaagtgcgactctcgctgaattagatttccaactgctcgccattttcgt---gatttggcattctgagaccttctctgcaacggaaacccctt |
327 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||||||| || ||| ||||||||| ||||||| ||||||||||||||||| |||||||||||| || |
|
|
| T |
42569894 |
atagaatgaagtgcggttctcgctgaattacatttccaaatgttcgtcattttcgtagtgatttggtattctgagaccttctctacaacggaaacccttt |
42569795 |
T |
|
| Q |
328 |
tttcttcatct |
338 |
Q |
| |
|
|||||| |||| |
|
|
| T |
42569794 |
tttctttatct |
42569784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 42569990 - 42569915
Alignment:
| Q |
110 |
taacctggaaataagatctcggcaactgcggagatgacggatggaagagagtcgagagggaatggaagaagtgtgg |
185 |
Q |
| |
|
||||||||| ||| |||||||| ||||||| |||||||||| || |||||||||||||||| |||| |||||||| |
|
|
| T |
42569990 |
taacctggagatatgatctcggtaactgcgaagatgacggaccgaggagagtcgagagggaacggaaaaagtgtgg |
42569915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University