View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_high_22 (Length: 342)
Name: NF3485_high_22
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 109 - 324
Target Start/End: Original strand, 36546973 - 36547188
Alignment:
| Q |
109 |
tgcttcacaaatcttataaattgttgcatgctaaattaaaataagtcttttatggtgattcataaagacgatgaagaaaaacaatcaagtacaaagacca |
208 |
Q |
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| T |
36546973 |
tgcttcacaaatcttataaattgttgcatgctaaattaaaataagtcttttatggtgattcataaagacgatgaagaaaaataatcaagtataaagacca |
36547072 |
T |
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| Q |
209 |
catctcccgttgtagctagattcatcctattaggaagtctttcaagaattaattgccacggaaaaatttgaacattttgacgagcccaaattttcaaccc |
308 |
Q |
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| T |
36547073 |
catctcccgttgtagctagattccccctattaggaagtctttcaagaattaattgctacggaaaaatttgaacattttgacgagcccaaattttcaactc |
36547172 |
T |
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| Q |
309 |
acttcgaacacctgca |
324 |
Q |
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| T |
36547173 |
acttcgaacacctgca |
36547188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 36546813 - 36546743
Alignment:
| Q |
37 |
tttgttttggtgaatttagtacctcttttacttacatctcagttgtgggttgggtacttacgataatattc |
107 |
Q |
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| T |
36546813 |
tttgttttggtgaatttagtacctcttttacttacatctcagttgtgggttgagtacttacgataatattc |
36546743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36546880 - 36546836
Alignment:
| Q |
1 |
gaagaaagggagggaccttgaatggtatttgaatcctttgttttg |
45 |
Q |
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| T |
36546880 |
gaagaaagggagggaccttgaatggtatttgaatcctttgttttg |
36546836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 36547287 - 36547328
Alignment:
| Q |
275 |
tttgaacattttgacgagcccaaattttcaacccacttcgaa |
316 |
Q |
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| T |
36547287 |
tttgaacattttaacgagcccaaattttcaacccacttcgaa |
36547328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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