View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_high_23 (Length: 341)
Name: NF3485_high_23
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 36546856 - 36547188
Alignment:
| Q |
1 |
ccattcaaggtccctccctttcttcctatctcgaaaccatctccaaaagattgaattaagctcatcaaccaagtcctcaagttctatgttcttcgaagaa |
100 |
Q |
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| T |
36546856 |
ccattcaaggtccctccctttcttcctatctcgaaaccatctccaaaagattgaattaagctcatcaaccaagtcctcaagttctatgttcttggaagaa |
36546955 |
T |
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| Q |
101 |
aaaatcat----------gcttcacaaatcttataaattgttgcatgctaaattaaaataagtcttttatggtgattcataaagacgatgaagaaaaaca |
190 |
Q |
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| T |
36546956 |
aaaatcatctcatttcttgcttcacaaatcttataaattgttgcatgctaaattaaaataagtcttttatggtgattcataaagacgatgaagaaaaata |
36547055 |
T |
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| Q |
191 |
atcaagtacaaagaccacatctcccgttgtagctagattcatcctattaggaagtctttcaagaattaattgccacggaaaaatttgaacattttgacga |
290 |
Q |
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| T |
36547056 |
atcaagtataaagaccacatctcccgttgtagctagattccccctattaggaagtctttcaagaattaattgctacggaaaaatttgaacattttgacga |
36547155 |
T |
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| Q |
291 |
gcccaaattttcaacccacttcgaacacctgca |
323 |
Q |
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| T |
36547156 |
gcccaaattttcaactcacttcgaacacctgca |
36547188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 36547287 - 36547328
Alignment:
| Q |
274 |
tttgaacattttgacgagcccaaattttcaacccacttcgaa |
315 |
Q |
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| T |
36547287 |
tttgaacattttaacgagcccaaattttcaacccacttcgaa |
36547328 |
T |
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