View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_high_25 (Length: 331)
Name: NF3485_high_25
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 31938832 - 31938516
Alignment:
| Q |
1 |
tccatgtcttttcctccgttatcttgatttcattttcatttttaagccaagaatattcaggccctggaatcgtatgaatgaatgttcatacaactgatga |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||| |
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| T |
31938832 |
tccatgtcttttccaccgttatcttgatttcattttcatttttaagccaagaatattcaggccatggaattgtatgaatgaatgttcgtacagctgatga |
31938733 |
T |
|
| Q |
101 |
cattattgatcatgatttaatattcacatttcggtgatgattttgcaagatttgatttatctgataacaaaaatatatggcaaatgggaatgtttaaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31938732 |
cattattgatcatgatttaatattcacatttcggtgatgattttgcaagatttgatttatctgataacaaaaaaatatggcaaatgggaatgtttaaaaa |
31938633 |
T |
|
| Q |
201 |
cagtgattgattgaatgacacttcaactcctatactatttttcttgctaaattgaaagtattaagtttggtttaggaaaacagaacacaagctcttattt |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31938632 |
cagtgtttgattgaatgacacttcaactcctatactatttttcttgttaaattgaaagtattaagattggtttaggaaaacagaacacaagctcttattt |
31938533 |
T |
|
| Q |
301 |
ttatgtcaggcctcgcc |
317 |
Q |
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||||||||||||||||| |
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| T |
31938532 |
ttatgtcaggcctcgcc |
31938516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 145
Target Start/End: Complemental strand, 13535049 - 13534969
Alignment:
| Q |
65 |
tggaatcgtatgaatgaatgttcatacaactgatgacattattgatcatgatttaatattcacatttcggtgatgattttg |
145 |
Q |
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|||||| |||||| |||||||| ||||| ||||||||||||| || |||||||| ||||||| || ||||||||||||| |
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| T |
13535049 |
tggaattgtatgattgaatgtttgtacaattgatgacattatttataatgatttatgattcacactttggtgatgattttg |
13534969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 32671582 - 32671548
Alignment:
| Q |
52 |
aatattcaggccctggaatcgtatgaatgaatgtt |
86 |
Q |
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||||||||||||||||||| ||||||||||||||| |
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| T |
32671582 |
aatattcaggccctggaattgtatgaatgaatgtt |
32671548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9389188 - 9388971
Alignment:
| Q |
1 |
tccatgtcttttcctccgttatcttgatttcattttcatttttaagccaagaatattcaggccctggaatcgtatgaatgaatgttcatacaactgatga |
100 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| |
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| T |
9389188 |
tccatgtcttttccaccgttattttgatttcattttcatttttaagccaagaatattcaagccctggaattgtatgaatgaatgtttgtacaactgatga |
9389089 |
T |
|
| Q |
101 |
cattattgatcatgatttaatattcacatttcggtgatgattttgcaagatttgatttatctgataacaaaaatatatggcaaatgggaatgttt-aaaa |
199 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | |||||||||| | ||||||| |||| |
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| T |
9389088 |
cattatttataatgatttaatattcacatttcggtgatgattttgcaag-----atttatctgaaaacaaaca-gtatggcaaatagaaatgtttgaaaa |
9388995 |
T |
|
| Q |
200 |
acagtgattgattgaatgacactt |
223 |
Q |
| |
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|| |||||||||| |||||||||| |
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|
| T |
9388994 |
actgtgattgatttaatgacactt |
9388971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 19810358 - 19810430
Alignment:
| Q |
56 |
ttcaggccctggaatcgtatgaatgaatgttcatacaactgatgacattattgatcatgatttaatattcaca |
128 |
Q |
| |
|
||||||||||||||| |||||| |||||||| ||||| |||||| |||||| || |||| |||| ||||||| |
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| T |
19810358 |
ttcaggccctggaattgtatgattgaatgtttgtacaattgatgatattatttataatgacttaagattcaca |
19810430 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 313
Target Start/End: Complemental strand, 1336766 - 1336676
Alignment:
| Q |
223 |
tcaactcctatactatttttcttgctaaattgaaagtattaagtttggtttaggaaaacagaacacaagctcttatttttatgtcaggcct |
313 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| |
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| T |
1336766 |
tcaattcctatactatttgtcttgttaaattgaaagtattaagtttggtttaggaaaacaaaacacaagctcatatttttacgtcaggcct |
1336676 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 1336957 - 1336890
Alignment:
| Q |
33 |
ttttcatttttaagccaagaatattcaggccctggaatcgtatgaatgaatgttcatacaactgatga |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||| |||||||||||||||| |||||||||||| |
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| T |
1336957 |
ttttcatttttaagccaataatattcagggcctggaattgtatgaatgaatgttcctacaactgatga |
1336890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1337001 - 1336959
Alignment:
| Q |
1 |
tccatgtcttttcctccgttatcttgatttcattttcattttt |
43 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
1337001 |
tccatgtcttttcaaccgttatcttgttttcattttcattttt |
1336959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 1336864 - 1336816
Alignment:
| Q |
175 |
atatggcaaatgggaatgtttaaaaacagtgattgattgaatgacactt |
223 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| | |||||||| |
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| T |
1336864 |
atatggcaaatggaaatgtttaaaaactatgattgatttactgacactt |
1336816 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 5639058 - 5638984
Alignment:
| Q |
31 |
cattttcatttttaagccaagaatattcaggccctggaatcgtatgaatgaatgttcatacaactgatgacatta |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||| ||||||||| ||||| | ||| ||||||||||| |
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| T |
5639058 |
cattttcatttttaagccaagagcattcaggctctggaattgtatgaatggatgtttgttcaattgatgacatta |
5638984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 5638983 - 5638949
Alignment:
| Q |
119 |
aatattcacatttcggtgatgattttgcaagattt |
153 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
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|
| T |
5638983 |
aatattcacacttcggtgatgattttgcaagattt |
5638949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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