View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_high_26 (Length: 318)
Name: NF3485_high_26
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 838309 - 838021
Alignment:
| Q |
14 |
agaagagattaattcagcaacaaactaacaaaaataatgagttcagttgtgcttttgactgcctttatttttagtagggtctcttcaccttttggtatat |
113 |
Q |
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| T |
838309 |
agaagagattaattcagcaacaaacaaactaaaataatgagttcagttgtgcttttgactgcctttatttttagtagggtctcttcaccttttggtatat |
838210 |
T |
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| Q |
114 |
taagtgcaactctattatgtaactaagtaccttaattaagcggataagccatcacacaatattttgaacaatatatattattataaactgataaggattt |
213 |
Q |
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| T |
838209 |
taagtgcaactctattatgtaactaagtaccttaattaagcggataagccatcacacaatattttgaacaatatatattattataaactgataaggattt |
838110 |
T |
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| Q |
214 |
taggaacatacatgtaacataaattcaaacaagtaataatatatatgtggaagagaaactcattttcaatgaattgaaaccaaaatttc |
302 |
Q |
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| T |
838109 |
taggaacatacatgtaacataaattcaaacaagtaataatatatatgtggatgagaaactcattttcaatgaattgaaaccaaactttc |
838021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 10482528 - 10482462
Alignment:
| Q |
229 |
aacataaattcaaacaagtaataatatatatgtggaagagaaactcattttcaatgaattgaaaccaaaatttc |
302 |
Q |
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| T |
10482528 |
aacataaattcaaacaagtaata-------tgtggaagagaaactcactttcaatgagtcgaaaccaaactttc |
10482462 |
T |
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