View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_high_28 (Length: 282)
Name: NF3485_high_28
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 2 - 272
Target Start/End: Original strand, 27358926 - 27359196
Alignment:
| Q |
2 |
tgaccatcgcaataaagctcaacacgaccatcatcatctcggcggagacgggctgccattggatagaacgggaccagcaccttgcttagagcttccttca |
101 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27358926 |
tgaccatcgcaataaagctcaacacgaccatcttcatctcggcggagacgggctgccattggatagaacgggaccagcaccttgcttagagcttccttca |
27359025 |
T |
|
| Q |
102 |
taatcttagcatcgaagaaattggacgtgccgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttggaaccaccaagtcgacgttggagttcca |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27359026 |
taatcttagcatcgaagaaattggacgtgccgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttggaaccaccaagtcgacgttggagttcca |
27359125 |
T |
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| Q |
202 |
taacgcctttcgtggtgtctcctccgccggacgcaccaccgtcgactctttcacgttgatcaacatctctg |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27359126 |
taacgcctttcgtggtgtctcctccgccggacgcaccaccgtcgactctttcacgttgatcaacatctctg |
27359196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 2 - 274
Target Start/End: Complemental strand, 45408180 - 45407908
Alignment:
| Q |
2 |
tgaccatcgcaataaagctcaacacgaccatcatcatctcggcggagacgggctgccattggatagaacgggaccagcaccttgcttagagcttccttca |
101 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45408180 |
tgaccatcgcaataaagctcaatgcgaccatcttcatctcggcggagacgggctgccattggatagaacaggaccagcaccttgcttagagcttccttca |
45408081 |
T |
|
| Q |
102 |
taatcttagcatcgaagaaattggacgtgccgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttggaaccaccaagtcgacgttggagttcca |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45408080 |
taatcttagcatcgaagaaattggacgtgccgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttggaaccaccaagtcgacgttggaattcca |
45407981 |
T |
|
| Q |
202 |
taacgcctttcgtggtgtctcctccgccggacgcaccaccgtcgactctttcacgttgatcaacatctctgct |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45407980 |
taacgcctttcgtggtgtctcctccgccggacgcaccaccatcgactctttcacgttgatcaacatctctgct |
45407908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 1127763 - 1127564
Alignment:
| Q |
2 |
tgaccatcgcaataaagctcaacacgaccatcatcatctcggcggagacgggctgccattggatagaacgggaccagcaccttgcttagagcttccttca |
101 |
Q |
| |
|
|||||||| |||| || ||||||||||||||| ||||| || || ||||| | ||||||||||| |||||||| ||||||||||| |||||||| || | |
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| T |
1127763 |
tgaccatcacaatcaatctcaacacgaccatcttcatcacgacgaagacgaccagccattggataaaacgggacaagcaccttgctaagagcttctttaa |
1127664 |
T |
|
| Q |
102 |
taatcttagcatcgaagaaattggacgtgccgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttggaaccaccaagtcgacgttggagttcca |
201 |
Q |
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|| ||| ||||| ||||||||||| | || || || || |||||||| || |||||||| || ||||| || |||||||| || |||||||| ||||| |
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| T |
1127663 |
gaaccttggcatcaaagaaattggaagcaccattaggtctataaaagtaaacacttggtgtatggaaattcggtaccaccaaatcaacgttggaattcca |
1127564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 1108167 - 1108097
Alignment:
| Q |
56 |
gccattggatagaacgggaccagcaccttgcttagagcttccttcataatcttagcatcgaagaaattgga |
126 |
Q |
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|||||||||||||||||||| ||||||| ||| |||||||||||||||||||| |||| |||||||||||| |
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| T |
1108167 |
gccattggatagaacgggacaagcacctagctgagagcttccttcataatcttggcattgaagaaattgga |
1108097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 31967203 - 31967273
Alignment:
| Q |
56 |
gccattggatagaacgggaccagcaccttgcttagagcttccttcataatcttagcatcgaagaaattgga |
126 |
Q |
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|||||||||||||| | ||| ||||| ||||| |||||||||||||||||||| | |||||||| ||||| |
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| T |
31967203 |
gccattggatagaatgagacaagcactttgctgagagcttccttcataatcttggtgtcgaagaatttgga |
31967273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 32016524 - 32016592
Alignment:
| Q |
58 |
cattggatagaacgggaccagcaccttgcttagagcttccttcataatcttagcatcgaagaaattgga |
126 |
Q |
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||||||||||||| ||| |||||||| | |||||||||||||||||||| || || ||||||||||| |
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| T |
32016524 |
cattggatagaacaagacaagcaccttaatgagagcttccttcataatcttggcgtccaagaaattgga |
32016592 |
T |
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