View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_high_30 (Length: 258)
Name: NF3485_high_30
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 18101975 - 18101743
Alignment:
| Q |
19 |
attacattgacactttgcaactatccacccgatgcagcttgcgaatgtttcgaaactccattatggcaatgagact--ggtgatnnnnnnnnttatatcg |
116 |
Q |
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| T |
18101975 |
attacattgacactttgcaattatccacccaatgcagcttgcgaatgtttcgaaactccattatggcaatgagacaacggtgataaaaaaaattatatcg |
18101876 |
T |
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| Q |
117 |
ataatgattgattttgtagtgcatcaaactcttaggaaaggtaatatgtttaccgattatttctccaagcttggagcacaatcgaatagtggtatgtgac |
216 |
Q |
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| T |
18101875 |
ataatgattgattttgtagtgcatcacactcttaggaaaggtaatatgtttaccgattatttctccaagcttggagcacaatcgaatagtggtatgtgac |
18101776 |
T |
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| Q |
217 |
tcttcttgatccatcggatgagcgtcattcatt |
249 |
Q |
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| T |
18101775 |
tcttcttgatccatcggctgagcgtcattcatt |
18101743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 37859583 - 37859351
Alignment:
| Q |
19 |
attacattgacactttgcaactatccacccgatgcagcttgcgaatgtttcgaaactccattatggcaatgagact--ggtgatnnnnnnnnttatatcg |
116 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
37859583 |
attacattgacactttgcaattatccacccaatgcagcttgcgaatgtttcgaaactccattatggcaatgagacaacggtgataaaaaaaattatatcg |
37859484 |
T |
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| Q |
117 |
ataatgattgattttgtagtgcatcaaactcttaggaaaggtaatatgtttaccgattatttctccaagcttggagcacaatcgaatagtggtatgtgac |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859483 |
ataatgattgattttgtagtgcatcacactcttaggaaaggtaatatgtttaccgattatttctccaagcttggagcacaatcgaatagtggtatgtgac |
37859384 |
T |
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| Q |
217 |
tcttcttgatccatcggatgagcgtcattcatt |
249 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
37859383 |
tcttcttgatccatcggctgagcgtcattcatt |
37859351 |
T |
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