View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_high_37 (Length: 251)
Name: NF3485_high_37
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_high_37 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 87 - 233
Target Start/End: Complemental strand, 27921946 - 27921801
Alignment:
| Q |
87 |
agttatttctgttaatatttttccgatgttaaactctaaaactgaacttttaatttataaagtgttcgacaaagacnnnnnnnatctaagggatttgaaa |
186 |
Q |
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| T |
27921946 |
agttatttctgttaatatttttccgatgttaaactctaaaactgaacttttaatttataaagtgtttgacaaagac-ttttttatctaagggatttgaaa |
27921848 |
T |
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| Q |
187 |
taatttcatcagtagatctagttgctagacatatagctagatttgca |
233 |
Q |
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| T |
27921847 |
taatttcatcagtagatctagttgctagacatatagctagatttgca |
27921801 |
T |
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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 27922153 - 27922100
Alignment:
| Q |
14 |
gagcacagagtagtcgataagtatcaaattggtggaagcattcaagacttggat |
67 |
Q |
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| T |
27922153 |
gagcacaaagtagtcgataagtatcaaattggtggaagcattcaagacttggat |
27922100 |
T |
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