View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3485_high_38 (Length: 249)

Name: NF3485_high_38
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3485_high_38
NF3485_high_38
[»] chr4 (8 HSPs)
chr4 (1-235)||(9000271-9000505)
chr4 (5-235)||(9030623-9030853)
chr4 (1-235)||(8979105-8979339)
chr4 (1-173)||(8966423-8966595)
chr4 (5-180)||(8954773-8954948)
chr4 (1-224)||(8914599-8914822)
chr4 (9-185)||(8900733-8900909)
chr4 (13-62)||(8929683-8929732)
[»] chr5 (2 HSPs)
chr5 (1-219)||(20074158-20074376)
chr5 (89-164)||(9400451-9400526)
[»] scaffold0287 (1 HSPs)
scaffold0287 (1-122)||(15568-15689)
[»] chr7 (1 HSPs)
chr7 (1-122)||(3630396-3630517)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 9000505 - 9000271
Alignment:
Q  1 gccacatcagtttgggctatgactgccttaatgaaaaacccaagagtaatgaggaaagtacacgatgaaattagaaacttgggacgtgaaaaagaatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||| ||||    
T  9000505 gccacatcagtttgggctatgactgccttaatgaaaaacccaagagtaatgaggaaagtacaagatgaaattagaaatttgggaggtgaaaaagattttt 9000406  T
Q  101 tagatgaagatgatattcaaaatttaccttatttgaaggcagtgattaaagagacgttaagattgcatctaccagccccattgctcctgtctagagaatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||  | ||  ||   ||||||||    
T  9000405 tagatgaagatgatattcaaaatttaccttatttgaaggcagtgattaaagagacgctaagattgcacctaccagcccctctacttatgcaaagagaatc 9000306  T
Q  201 acgtgaaaattgcactataaatggatacaatattc 235  Q
    |||||||||||||||||||| ||||||||||||||    
T  9000305 acgtgaaaattgcactataagtggatacaatattc 9000271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 9030623 - 9030853
Alignment:
Q  5 catcagtttgggctatgactgccttaatgaaaaacccaagagtaatgaggaaagtacacgatgaaattagaaacttgggacgtgaaaaagaatttttaga 104  Q
    ||||||||||||||||||| ||| |||||||||||||||||||| ||   |||||||| || ||||| |||||||||||| ||| |||||| | ||||||    
T  9030623 catcagtttgggctatgaccgccctaatgaaaaacccaagagtattggataaagtacaagaagaaatcagaaacttgggaggtgcaaaagattatttaga 9030722  T
Q  105 tgaagatgatattcaaaatttaccttatttgaaggcagtgattaaagagacgttaagattgcatctaccagccccattgctcctgtctagagaatcacgt 204  Q
    ||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9030723 tgaaggtgatcttcaaaatttaccttatttgaatgcagtgattaaagagacgttaagattgcatctaccagccccattgctcctgtctagagaatcacgt 9030822  T
Q  205 gaaaattgcactataaatggatacaatattc 235  Q
    |||||||||||||||||||||||||||||||    
T  9030823 gaaaattgcactataaatggatacaatattc 9030853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 8979105 - 8979339
Alignment:
Q  1 gccacatcagtttgggctatgactgccttaatgaaaaacccaagagtaatgaggaaagtacacgatgaaattagaaacttgggacgtgaaaaagaatttt 100  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| || || |||||||| ||||||||| || ||||||| ||||    
T  8979105 gccacatcagtttgggctatgactgccctaataaaaaacccaagagtaatgagaaaagtgcaagaggaaattaggaacttgggaggtaaaaaagattttt 8979204  T
Q  101 tagatgaagatgatattcaaaatttaccttatttgaaggcagtgattaaagagacgttaagattgcatctaccagccccattgctcctgtctagagaatc 200  Q
    ||||||||||||||||||||||||  |  ||||||||||||||||| |||||||| ||||||||| | |||||||| ||| ||||  |  | ||||||||    
T  8979205 tagatgaagatgatattcaaaattctctatatttgaaggcagtgataaaagagacattaagattgtacctaccagctccactgcttgtaccaagagaatc 8979304  T
Q  201 acgtgaaaattgcactataaatggatacaatattc 235  Q
    | | ||||  |||| ||| ||||| ||||||||||    
T  8979305 aagggaaacatgcattatcaatggctacaatattc 8979339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 8966595 - 8966423
Alignment:
Q  1 gccacatcagtttgggctatgactgccttaatgaaaaacccaagagtaatgaggaaagtacacgatgaaattagaaacttgggacgtgaaaaagaatttt 100  Q
    |||||||||||||||||||| ||  || | || ||||||||||||||||||| ||||||||| || |||||||||||||||||| || ||||||||||      
T  8966595 gccacatcagtttgggctataacctccctgataaaaaacccaagagtaatgaagaaagtacaagaagaaattagaaacttgggaagtaaaaaagaattca 8966496  T
Q  101 tagatgaagatgatattcaaaatttaccttatttgaaggcagtgattaaagagacgttaagattgcatctacc 173  Q
    |||| ||| |||||||||||||||| || ||||| ||||||||||| ||||||||||| |||||||| |||||    
T  8966495 tagacgaaaatgatattcaaaatttcccatatttaaaggcagtgataaaagagacgttgagattgcacctacc 8966423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 180
Target Start/End: Original strand, 8954773 - 8954948
Alignment:
Q  5 catcagtttgggctatgactgccttaatgaaaaacccaagagtaatgaggaaagtacacgatgaaattagaaacttgggacgtgaaaaagaatttttaga 104  Q
    ||||||||||||||||||||||  |||| |||||||| ||||||||||| |||||| | || ||||| ||||| ||||||  | ||||||| |||||| |    
T  8954773 catcagtttgggctatgactgctctaataaaaaaccctagagtaatgagtaaagtaaaagaagaaataagaaatttgggagttaaaaaagattttttata 8954872  T
Q  105 tgaagatgatattcaaaatttaccttatttgaaggcagtgattaaagagacgttaagattgcatctaccagcccca 180  Q
    ||||||||||||||||||||  ||||||||||||||  |  ||||||||||  ||||||| || ||||||||||||    
T  8954873 tgaagatgatattcaaaattgtccttatttgaaggctatagttaaagagacactaagattacacctaccagcccca 8954948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 8914822 - 8914599
Alignment:
Q  1 gccacatcagtttgggctatgactgccttaatgaaaaacccaagagtaatgaggaaagtacacgatgaaattagaaacttgggacgtgaaaaagaatttt 100  Q
    |||||| ||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||  | || ||||| || |   ||  | |||||||||||     
T  8914822 gccacagcagtttgggctatgactgccttaataaaaaatccaagagtaatgaagaaagtacaacaagagattaggaattcaagagttaaaaaagaattta 8914723  T
Q  101 tagatgaagatgatattcaaaatttaccttatttgaaggcagtgattaaagagacgttaagattgcatctaccagccccattgctcctgtctagagaatc 200  Q
    |||||||||||||||| | ||||||  | || || ||||||||||| |||||||| || |||||| | || ||||||||||||||   | | |||||| |    
T  8914722 tagatgaagatgatatacgaaatttgtcctacttaaaggcagtgataaaagagacattgagattgtacctgccagccccattgcttgcgccaagagaaac 8914623  T
Q  201 acgtgaaaattgcactataaatgg 224  Q
    |  |||||| ||||||||||||||    
T  8914622 aactgaaaaatgcactataaatgg 8914599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 8900909 - 8900733
Alignment:
Q  9 agtttgggctatgactgccttaatgaaaaacccaagagtaatgaggaaagtacacgatgaaattagaaacttgggacgtgaaaaagaatttttagatgaa 108  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| |||||| ||  | || ||||| || |   ||  | ||||||||||| ||||||||    
T  8900909 agtttgggctatgactgccttaataaaaaatccaagagtaatgaagaaagtgcaacaagagattaggaattcaagagttaaaaaagaatttatagatgaa 8900810  T
Q  109 gatgatattcaaaatttaccttatttgaaggcagtgattaaagagacgttaagattgcatctaccagccccattgct 185  Q
    |||||||| ||||||||  | || |||||||||||||| |||||||| || |||||| | ||||||| |||||||||    
T  8900809 gatgatatacaaaatttctcctacttgaaggcagtgataaaagagacattgagattgtacctaccaggcccattgct 8900733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 8929732 - 8929683
Alignment:
Q  13 tgggctatgactgccttaatgaaaaacccaagagtaatgaggaaagtaca 62  Q
    ||||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  8929732 tgggctatgactgccctaataaaaaacccaagagtaatgaagaaagtaca 8929683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 20074376 - 20074158
Alignment:
Q  1 gccacatcagtttgggctatgactgccttaatgaaaaacccaagagtaatgaggaaagtacacgatgaaattagaaacttgggacgtgaaaaagaatttt 100  Q
    |||||| |||| |||||||||||||| ||||| ||||| ||||||||||||| |||||||||  | || |||||||| |    |  | |||||||||||     
T  20074376 gccacaacagtatgggctatgactgcattaataaaaaatccaagagtaatgaagaaagtacaacaagagattagaaattcaaaagttaaaaaagaattta 20074277  T
Q  101 tagatgaagatgatattcaaaatttaccttatttgaaggcagtgattaaagagacgttaagattgcatctaccagccccattgctcctgtctagagaatc 200  Q
    |||||||||||||||| ||||||||  | || |||||||||||||| ||||||||  | |||||| |  | ||||||||||||||  || | |||||| |    
T  20074276 tagatgaagatgatatacaaaatttctcctacttgaaggcagtgataaaagagacactgagattgtacttgccagccccattgcttgtgccaagagaaac 20074177  T
Q  201 acgtgaaaattgcactata 219  Q
    | | ||||| |||||||||    
T  20074176 aagggaaaagtgcactata 20074158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 164
Target Start/End: Complemental strand, 9400526 - 9400451
Alignment:
Q  89 aaaaagaatttttagatgaagatgatattcaaaatttaccttatttgaaggcagtgattaaagagacgttaagatt 164  Q
    ||||||| |||||||||||||||||||| ||||||||  | || ||||||||||| || |||||||| || |||||    
T  9400526 aaaaagactttttagatgaagatgatatacaaaatttctcctacttgaaggcagtcataaaagagacattgagatt 9400451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 15568 - 15689
Alignment:
Q  1 gccacatcagtttgggctatgactgccttaatgaaaaacccaagagtaatgaggaaagtacacgatgaaattagaaacttgggacgtgaaaaagaatttt 100  Q
    |||||||| |||||||| |||||||  |||||||| || ||||||| ||||| |||||  || || |||||||||||| |  |  |  ||||||| ||      
T  15568 gccacatcggtttgggcgatgactggattaatgaagaatccaagagcaatgaagaaagctcaagaagaaattagaaacatatgtggcaaaaaagagttca 15667  T
Q  101 tagatgaagatgatattcaaaa 122  Q
    ||||||||||||||||||||||    
T  15668 tagatgaagatgatattcaaaa 15689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 3630517 - 3630396
Alignment:
Q  1 gccacatcagtttgggctatgactgccttaatgaaaaacccaagagtaatgaggaaagtacacgatgaaattagaaacttgggacgtgaaaaagaatttt 100  Q
    |||||||| |||||||| |||||||  |||||||| || ||||||| ||||| |||||  || || |||||||||||| |  |  |  ||||||| ||      
T  3630517 gccacatcggtttgggcgatgactggattaatgaagaatccaagagcaatgaagaaagctcaagaagaaattagaaacatatgtggcaaaaaagagttca 3630418  T
Q  101 tagatgaagatgatattcaaaa 122  Q
    ||||||||||||||||||||||    
T  3630417 tagatgaagatgatattcaaaa 3630396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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