View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_high_40 (Length: 243)
Name: NF3485_high_40
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 54540321 - 54540106
Alignment:
| Q |
11 |
cgaagaatatgatgaataaagatcatccactatttagttataaagggttcaataagctcaaaaagtagcataatgatgtaaaacatgg-tctaactatgc |
109 |
Q |
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| T |
54540321 |
cgaagaatatgatgaataaagatcatccactatttagctataaagggttcaataagctcaacaagtagcataatgatgtaaaacatgggtctaactatgc |
54540222 |
T |
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| Q |
110 |
cctaattcaaccatttactaagattcagaataacataatgtacctgaaacatgtttcctagcaaagtttgagcccaacaagaactccaacatgaagatcg |
209 |
Q |
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| T |
54540221 |
cctaattcaaccatttactaagattcagaataacataatgtacctgaaacatgtttcctagcaaagtttgagcccaacaagaactccaacatgaagatcg |
54540122 |
T |
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| Q |
210 |
attgagcaccaatact |
225 |
Q |
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|||||||||||||||| |
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| T |
54540121 |
attgagcaccaatact |
54540106 |
T |
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