View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_high_41 (Length: 242)
Name: NF3485_high_41
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 6980651 - 6980726
Alignment:
| Q |
152 |
attatgtttcttcc-tgggtgcctcataagctcagcaccaaaatgcttctaaacaattaatcaaaaactagtaaat |
226 |
Q |
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| T |
6980651 |
attatgtttcttccatgggtgcctcctaagctcagcaccaaaatgcttctaaacaattaatcaaaaattagtaaat |
6980726 |
T |
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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 6980499 - 6980557
Alignment:
| Q |
1 |
tatgatgattctatttctaatttttccaccaacatatacttgcttggttttcaattatg |
59 |
Q |
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| T |
6980499 |
tatgatgattctatttctaatttttccaccaacatatacttgcttagttttcaattatg |
6980557 |
T |
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