View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_high_42 (Length: 240)
Name: NF3485_high_42
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 22933747 - 22933523
Alignment:
| Q |
1 |
tgactaatcttatcaaatggatagcttcaaaagaaggatcagaaattaatctcaccaaagaagtgttttcaagaatatttttaatcacttcaagggtagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22933747 |
tgactaatcttatcaaatggatagcttcaaaagaaggatcagaaattaatctcaccaaagaagttttttcaagaatatttttaatcacttcaagggtagc |
22933648 |
T |
|
| Q |
101 |
ctttgggaaggagtgcaaggataacaagaaattcatatcattggtatgggaatccaccagagttgctggaggttttaatttgggagatttgtacccttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
22933647 |
ctttgggaaggagtgcaaggataacaagaaattcatatcattggtatgggaatccaccaggagtgctggaggttttaatttgggagatttgtacccttct |
22933548 |
T |
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| Q |
201 |
tataaatggcttcaaaacctatctg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
22933547 |
tataaatggcttcaaaacctatctg |
22933523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 22914344 - 22914568
Alignment:
| Q |
1 |
tgactaatcttatcaaatggatagcttcaaaagaaggatcagaaattaatctcaccaaagaagtgttttcaagaatatttttaatcacttcaagggtagc |
100 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || || |
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| T |
22914344 |
tgactaatctaatcaaatggatagcttcaaaggaaggatcagaaattaatctcaccaaagaagtgaattcaagaatatttttaatcacttcaagagttgc |
22914443 |
T |
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| Q |
101 |
ctttgggaaggagtgcaaggataacaagaaattcatatcattggtatgggaatccaccagagttgctggaggttttaatttgggagatttgtacccttct |
200 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22914444 |
ctttgggaaggagtgcaaggataataaaaaattcatatcattggtatgggaagccaccagagttgctggaggttttaatttgggagatttgtacccttct |
22914543 |
T |
|
| Q |
201 |
tataaatggcttcaaaacctatctg |
225 |
Q |
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|||||||||||||||||| |||||| |
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| T |
22914544 |
tataaatggcttcaaaacatatctg |
22914568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 22939753 - 22939967
Alignment:
| Q |
3 |
actaatcttatcaaatggatagcttcaaaagaaggatcagaaattaatctcaccaaagaagtgttttcaagaatatttttaatcacttcaagggtagcct |
102 |
Q |
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|||||||| ||||| |||||| |||| |||||||||||| |||| ||| | ||||||||||| ||||||| ||| | | ||||||||||||| ||||| |
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| T |
22939753 |
actaatctaatcaagtggatatcttctaaagaaggatcacaaatcaattttaccaaagaagttttttcaacaatttctacaatcacttcaaggacagcct |
22939852 |
T |
|
| Q |
103 |
ttgggaaggagtgcaaggataacaagaaattcatatcattggtatgggaatccaccagagttgctggaggttttaatttgggagatttgtacccttctta |
202 |
Q |
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||||||| |||| || || || ||||||||||||| | ||| |||| | | | ||||||| |||||| |||||||||||||||||||||||| |
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| T |
22939853 |
ttgggaaaaagtgtaaagaaaatcagaaattcatatctattgtaagggatgctattaagattgctggtggttttgatttgggagatttgtacccttcttg |
22939952 |
T |
|
| Q |
203 |
taaatggcttcaaaa |
217 |
Q |
| |
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|| || ||||||||| |
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| T |
22939953 |
tagattgcttcaaaa |
22939967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 23033742 - 23033690
Alignment:
| Q |
163 |
ttgctggaggttttaatttgggagatttgtacccttcttataaatggcttcaa |
215 |
Q |
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|||| ||||||||||| ||||||||||||| ||||||| ||||||||||||| |
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| T |
23033742 |
ttgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaa |
23033690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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