View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3485_high_46 (Length: 239)

Name: NF3485_high_46
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3485_high_46
NF3485_high_46
[»] chr7 (9 HSPs)
chr7 (8-223)||(747641-747856)
chr7 (9-58)||(2349763-2349812)
chr7 (8-58)||(20100946-20100996)
chr7 (8-51)||(26460767-26460810)
chr7 (8-58)||(709784-709834)
chr7 (8-58)||(2252173-2252223)
chr7 (8-58)||(23598529-23598579)
chr7 (8-58)||(26182603-26182653)
chr7 (16-58)||(3067746-3067788)
[»] chr4 (7 HSPs)
chr4 (8-58)||(3734615-3734665)
chr4 (8-58)||(49639583-49639633)
chr4 (8-58)||(3719262-3719312)
chr4 (8-58)||(19929191-19929241)
chr4 (8-58)||(49636290-49636340)
chr4 (8-39)||(14702208-14702239)
chr4 (4-45)||(11561115-11561156)
[»] chr3 (10 HSPs)
chr3 (8-58)||(5886748-5886798)
chr3 (8-58)||(5896732-5896782)
chr3 (8-58)||(23374494-23374544)
chr3 (8-58)||(29233354-29233404)
chr3 (9-45)||(6173127-6173163)
chr3 (8-58)||(16314354-16314404)
chr3 (8-58)||(16414520-16414570)
chr3 (8-58)||(18495348-18495398)
chr3 (16-58)||(28327763-28327805)
chr3 (16-58)||(28331088-28331130)
[»] chr2 (3 HSPs)
chr2 (8-58)||(18939196-18939246)
chr2 (8-44)||(22592815-22592851)
chr2 (16-58)||(40677529-40677571)
[»] chr1 (11 HSPs)
chr1 (8-58)||(37642163-37642213)
chr1 (8-51)||(16838707-16838750)
chr1 (8-51)||(16848637-16848680)
chr1 (8-58)||(17902554-17902604)
chr1 (8-58)||(20981661-20981711)
chr1 (8-58)||(24200010-24200060)
chr1 (9-63)||(28918679-28918733)
chr1 (16-58)||(23441041-23441083)
chr1 (16-58)||(33898644-33898686)
chr1 (12-58)||(49716688-49716734)
chr1 (12-56)||(49720170-49720214)
[»] chr6 (5 HSPs)
chr6 (9-58)||(17232158-17232207)
chr6 (8-58)||(22920831-22920881)
chr6 (12-58)||(11411080-11411126)
chr6 (16-58)||(32109987-32110029)
chr6 (9-58)||(2331585-2331634)
[»] scaffold0067 (1 HSPs)
scaffold0067 (8-51)||(27664-27707)
[»] scaffold1048 (1 HSPs)
scaffold1048 (8-58)||(1703-1753)
[»] chr8 (5 HSPs)
chr8 (8-58)||(24903251-24903301)
chr8 (8-58)||(24435334-24435383)
chr8 (8-58)||(24445380-24445429)
chr8 (8-45)||(17012811-17012848)
chr8 (8-45)||(17544353-17544390)
[»] chr5 (2 HSPs)
chr5 (8-58)||(26727248-26727298)
chr5 (8-58)||(25185691-25185740)
[»] scaffold0175 (1 HSPs)
scaffold0175 (8-45)||(28438-28475)
[»] scaffold0012 (1 HSPs)
scaffold0012 (8-45)||(26657-26694)
[»] scaffold0007 (1 HSPs)
scaffold0007 (16-58)||(92751-92793)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 747856 - 747641
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatcgatgttaatgagaagtactaaagtgaatgagagaatcaataaacgatag 107  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  747856 gatatttattattacttcgatagttattgatatacttgccaattttctatcaatgttaatgagaagtactaaagtgaatgagataatcaataaacgatag 747757  T
Q  108 ttatgctcgcatcgacaagtattctaagctttatcaaattttaatatgcataagtatacattaaaaatttaagacacacaaacaaacacacatattttta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  747756 ttatgctcgcatcgacaagtattctaagctttatcaaattttaatatgcataagtatacattaaaaatttaagacacacaaacaaacacacatattttta 747657  T
Q  208 tctatatgtgtgtata 223  Q
    ||||||||||||||||    
T  747656 tctatatgtgtgtata 747641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 2349763 - 2349812
Alignment:
Q  9 atatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  2349763 atatttattactacttcgatagttattggtacacttgtcaattatctatc 2349812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 20100946 - 20100996
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||||||||||| ||||| ||| ||||||||    
T  20100946 gatatttattactacttcgatagttattggtacacttgccaaatttctatc 20100996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 26460767 - 26460810
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaatt 51  Q
    |||||||||||||||||||||||||||||||| ||||| |||||    
T  26460767 gatatttattactacttcgatagttattggtacacttgccaatt 26460810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 709834 - 709784
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||||||||||| ||||| ||| | ||||||    
T  709834 gatatttattactacttcgatagttattggtacacttgccaaatatctatc 709784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 2252173 - 2252223
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||||||||||| ||||| ||| | ||||||    
T  2252173 gatatttattactacttcgatagttattggtacacttgccaaatatctatc 2252223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 23598579 - 23598529
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||||||||||| ||||| ||| | ||||||    
T  23598579 gatatttattactacttcgatagttattggtacacttgccaaatatctatc 23598529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 26182603 - 26182653
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||| ||||||    
T  26182603 gatatttattactactttgatagttattggtacacttgccaattatctatc 26182653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 3067788 - 3067746
Alignment:
Q  16 ttactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    ||||||||||||||||  |||||||||||||||| ||||||||    
T  3067788 ttactacttcgatagtatttggtatacttgtcaaatttctatc 3067746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 3734615 - 3734665
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  3734615 gatatttattactacttcgatagttattggtacacttgccaattatctatc 3734665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 49639633 - 49639583
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  49639633 gatatttattactacttcgatagttattggtacacttgccaattatctatc 49639583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 3719312 - 3719262
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||||||||||| ||||| ||| | ||||||    
T  3719312 gatatttattactacttcgatagttattggtacacttgccaaatatctatc 3719262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 19929191 - 19929241
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||||||||||| ||||| ||| | ||||||    
T  19929191 gatatttattactacttcgatagttattggtacacttgccaaatatctatc 19929241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 49636340 - 49636290
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    ||||||||||||||||||||||||||||| || ||||| ||||| ||||||    
T  49636340 gatatttattactacttcgatagttattgatacacttgccaattatctatc 49636290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 14702208 - 14702239
Alignment:
Q  8 gatatttattactacttcgatagttattggta 39  Q
    ||||||||||||||||||||||||||||||||    
T  14702208 gatatttattactacttcgatagttattggta 14702239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 11561115 - 11561156
Alignment:
Q  4 aaatgatatttattactacttcgatagttattggtatacttg 45  Q
    ||||||||||||||||||||||||||||| || ||| |||||    
T  11561115 aaatgatatttattactacttcgatagttttttgtacacttg 11561156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 5886798 - 5886748
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  5886798 gatatttattactacttcgatagttattggtacacttgccaattatctatc 5886748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 5896782 - 5896732
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  5896782 gatatttattactacttcgatagttattggtacacttgccaattatctatc 5896732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 23374544 - 23374494
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||    
T  23374544 gatatttattactatttcgatagttattggtacacttgccaattatctatc 23374494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 29233404 - 29233354
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    ||||||| |||||||||||||||||||||||| ||||| ||||| ||||||    
T  29233404 gatattttttactacttcgatagttattggtacacttgccaattatctatc 29233354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 6173163 - 6173127
Alignment:
Q  9 atatttattactacttcgatagttattggtatacttg 45  Q
    ||||||||||||||||||||||||||||||| |||||    
T  6173163 atatttattactacttcgatagttattggtacacttg 6173127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 16314404 - 16314354
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||| ||||||||||||| ||||| ||| | ||||||    
T  16314404 gatatttattactacttccatagttattggtacacttgccaaatatctatc 16314354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 16414570 - 16414520
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||| ||||||||||||| ||||| ||| | ||||||    
T  16414570 gatatttattactacttccatagttattggtacacttgccaaatatctatc 16414520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 18495398 - 18495348
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||| ||||||||||||| ||||| ||| | ||||||    
T  18495398 gatatttattactacttccatagttattggtacacttgccaaatatctatc 18495348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 28327763 - 28327805
Alignment:
Q  16 ttactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||    
T  28327763 ttactacttcgatagttattggtacacttgccaattatctatc 28327805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 28331088 - 28331130
Alignment:
Q  16 ttactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||    
T  28331088 ttactacttcgatagttattggtacacttgccaattatctatc 28331130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 18939196 - 18939246
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  18939196 gatatttattactacttcgatagttattggtacacttgccaattatctatc 18939246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 22592815 - 22592851
Alignment:
Q  8 gatatttattactacttcgatagttattggtatactt 44  Q
    |||||||||||||||||||||||||||||||| ||||    
T  22592815 gatatttattactacttcgatagttattggtacactt 22592851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 40677571 - 40677529
Alignment:
Q  16 ttactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||    
T  40677571 ttactacttcgatagttattggtacacttgccaattatctatc 40677529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 37642163 - 37642213
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||||||||||| ||||||||| | ||||||    
T  37642163 gatatttattactacttcgatagttattggtacacttgtcaaatatctatc 37642213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 16838750 - 16838707
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaatt 51  Q
    |||||||||||||||||||||||||||||||| ||||| |||||    
T  16838750 gatatttattactacttcgatagttattggtacacttgccaatt 16838707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 16848680 - 16848637
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaatt 51  Q
    |||||||||||||||||||||||||||||||| ||||| |||||    
T  16848680 gatatttattactacttcgatagttattggtacacttgccaatt 16848637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 17902604 - 17902554
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||||||||||| ||||| ||| | ||||||    
T  17902604 gatatttattactacttcgatagttattggtacacttgccaaatatctatc 17902554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 20981661 - 20981711
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||||||||||| ||||| ||| | ||||||    
T  20981661 gatatttattactacttcgatagttattggtacacttgccaaatatctatc 20981711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 24200060 - 24200010
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||||||||||| ||||| ||| ||| ||||    
T  24200060 gatatttattactacttcgatagttattggtacacttgccaaatttttatc 24200010  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 28918679 - 28918733
Alignment:
Q  9 atatttattactacttcgatagttattggtatacttgtcaattttctatcgatgt 63  Q
    ||||||||||||||||||||||||||||||| |||||  |||| |||||| ||||    
T  28918679 atatttattactacttcgatagttattggtacacttgctaattatctatcaatgt 28918733  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 23441083 - 23441041
Alignment:
Q  16 ttactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||    
T  23441083 ttactacttcgatagttattggtacacttgccaattatctatc 23441041  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 33898644 - 33898686
Alignment:
Q  16 ttactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||    
T  33898644 ttactacttcgatagttattggtagacttgccaattatctatc 33898686  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 49716688 - 49716734
Alignment:
Q  12 tttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    ||||||| ||||||||||||| |||||| ||||||||||| ||||||    
T  49716688 tttattattacttcgatagtttttggtacacttgtcaattatctatc 49716734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 49720170 - 49720214
Alignment:
Q  12 tttattactacttcgatagttattggtatacttgtcaattttcta 56  Q
    ||||||| ||||||||||||| |||||| ||||||||||| ||||    
T  49720170 tttattattacttcgatagtttttggtacacttgtcaattatcta 49720214  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 17232158 - 17232207
Alignment:
Q  9 atatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    ||||||||||||||||||||||||||||||| ||||||||| | ||||||    
T  17232158 atatttattactacttcgatagttattggtacacttgtcaaatatctatc 17232207  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 22920831 - 22920881
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||||||||||| ||||| ||| | ||||||    
T  22920831 gatatttattactacttcgatagttattggtacacttgccaaatatctatc 22920881  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 11411080 - 11411126
Alignment:
Q  12 tttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    ||||||| ||||||||||||| |||||| ||||||||||| ||||||    
T  11411080 tttattattacttcgatagtttttggtacacttgtcaattatctatc 11411126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 32109987 - 32110029
Alignment:
Q  16 ttactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||    
T  32109987 ttactacttcgatagtttttggtacacttgtcaattgtctatc 32110029  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 2331585 - 2331634
Alignment:
Q  9 atatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||| |||||| ||||| ||| | ||||||    
T  2331585 atatttattactacttcgatagtttttggtacacttgccaaatatctatc 2331634  T

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Target: scaffold0067 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 27664 - 27707
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaatt 51  Q
    |||||||||||||||||||||||||||||||| ||||| |||||    
T  27664 gatatttattactacttcgatagttattggtacacttgccaatt 27707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1048 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1048
Description:

Target: scaffold1048; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 1703 - 1753
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    ||||||| |||||||||||||||||||||||| ||||| ||||| ||||||    
T  1703 gatatttcttactacttcgatagttattggtacacttgccaattctctatc 1753  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 24903301 - 24903251
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||||||||||| ||||| ||| | ||||||    
T  24903301 gatatttattactacttcgatagttattggtacacttgccaaatatctatc 24903251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 24435334 - 24435383
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||| ||||||    
T  24435334 gatatttattactacttcgatag-tattggtacacttgccaattatctatc 24435383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 24445380 - 24445429
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||| ||||||    
T  24445380 gatatttattactacttcgatag-tattggtacacttgccaattatctatc 24445429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 17012848 - 17012811
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttg 45  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  17012848 gatatttgttactacttcgatagttattggtacacttg 17012811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 17544353 - 17544390
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttg 45  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  17544353 gatatttgttactacttcgatagttattggtacacttg 17544390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 26727248 - 26727298
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||||||||||| ||||| ||| | ||||||    
T  26727248 gatatttattactacttcgatagttattggtacacttgccaaatatctatc 26727298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 25185691 - 25185740
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    ||||||||||||||||||||||||| |||||| ||||||||| | ||||||    
T  25185691 gatatttattactacttcgatagtt-ttggtacacttgtcaaatatctatc 25185740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 28475 - 28438
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttg 45  Q
    |||||||||||||||||||||||||||||||| |||||    
T  28475 gatatttattactacttcgatagttattggtacacttg 28438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 26694 - 26657
Alignment:
Q  8 gatatttattactacttcgatagttattggtatacttg 45  Q
    |||||||||||||||||||||||||||||||| |||||    
T  26694 gatatttattactacttcgatagttattggtacacttg 26657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 92751 - 92793
Alignment:
Q  16 ttactacttcgatagttattggtatacttgtcaattttctatc 58  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||    
T  92751 ttactacttcgatagttattggtacacttgccaattatctatc 92793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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