View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_high_52 (Length: 208)
Name: NF3485_high_52
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 39579275 - 39579457
Alignment:
| Q |
13 |
cacagactaaaacatgatttggttcaattctgaacttgtaatagcctttgtgagggagacattgaccgttgataaccaagtgaagctcaacaagttgccg |
112 |
Q |
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| T |
39579275 |
cacaaactaaaacatgatttggttcaattctgaacttgtaatagcctttgtgagggagacattgaccgttgataaccaagtgaagctcaacaagttgccg |
39579374 |
T |
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| Q |
113 |
ataagatcttcttttcttcccaacgacactttggaacgaacaccaatgctaaagcaacattggggaacttcccatgaacctca |
195 |
Q |
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| T |
39579375 |
atgagatcttcttttcttcccaacgacactttggaacgaacaccaatgctaaagcaacattggggaacttcccatgaacctca |
39579457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 39623081 - 39622981
Alignment:
| Q |
13 |
cacagactaaaacatgatttggttcaattctgaacttgtaatagcctttgtgagggagacattgaccgttgataaccaagtgaagctcaacaagttgccg |
112 |
Q |
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| T |
39623081 |
cacaaactaacacatgattttgttcaattctgaagttgtaataacctttacggcggacacagagaccatttataaccaagtgaagctcaacaagtagccg |
39622982 |
T |
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| Q |
113 |
a |
113 |
Q |
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| T |
39622981 |
a |
39622981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 183
Target Start/End: Complemental strand, 39622949 - 39622915
Alignment:
| Q |
149 |
cgaacaccaatgctaaagcaacattggggaacttc |
183 |
Q |
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| T |
39622949 |
cgaataccaatgctaaagcaacattggggaacttc |
39622915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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