View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3485_high_54 (Length: 205)
Name: NF3485_high_54
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_high_54 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 44613928 - 44614093
Alignment:
| Q |
25 |
catccaaacatacactcaaataataattgtatacagtattcttctttacgattgaaaacaatatcttgaaaagttctataactcttagtggtctgatttg |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44613928 |
catccaaacatacactcaaataataattgtatacagtattcttctttacgattgaaaacaatatcttgaaaagttctataactcttggtggtctgatttg |
44614027 |
T |
|
| Q |
125 |
aggaccactgttttctttgttgttgaaaggaatgactgcaaaattacattaccattgttgtctgtg |
190 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
44614028 |
aggaccactgttttctttattgttgaaaggaacgactgcaaaattacattaccattgttctctgtg |
44614093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 162
Target Start/End: Original strand, 17058161 - 17058190
Alignment:
| Q |
133 |
tgttttctttgttgttgaaaggaatgactg |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17058161 |
tgttttctttgttgttgaaaggaatgactg |
17058190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University