View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3485_high_55 (Length: 204)

Name: NF3485_high_55
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3485_high_55
NF3485_high_55
[»] chr8 (6 HSPs)
chr8 (4-124)||(6818504-6818622)
chr8 (4-129)||(5537092-5537215)
chr8 (4-129)||(44668827-44668948)
chr8 (133-188)||(3897397-3897452)
chr8 (140-186)||(44668808-44668854)
chr8 (143-188)||(5537186-5537231)
[»] chr7 (13 HSPs)
chr7 (4-129)||(36017890-36018013)
chr7 (4-129)||(11283388-11283511)
chr7 (4-126)||(48187370-48187489)
chr7 (141-188)||(12528816-12528863)
chr7 (4-129)||(16421596-16421716)
chr7 (4-129)||(21268213-21268335)
chr7 (141-188)||(36017872-36017919)
chr7 (147-186)||(48187462-48187501)
chr7 (4-62)||(16483984-16484042)
chr7 (4-129)||(12528722-12528845)
chr7 (143-188)||(16483968-16484013)
chr7 (148-188)||(11283482-11283522)
chr7 (143-186)||(21268308-21268351)
[»] chr3 (4 HSPs)
chr3 (3-129)||(1311417-1311540)
chr3 (133-186)||(19932652-19932705)
chr3 (27-129)||(11034923-11035023)
chr3 (145-186)||(1311404-1311445)
[»] chr1 (5 HSPs)
chr1 (4-129)||(18153339-18153462)
chr1 (133-186)||(18901883-18901936)
chr1 (3-129)||(18901908-18902031)
chr1 (148-188)||(18153328-18153368)
chr1 (133-175)||(51783566-51783608)
[»] chr4 (4 HSPs)
chr4 (4-129)||(15418864-15418986)
chr4 (4-129)||(28654437-28654560)
chr4 (133-188)||(52944710-52944765)
chr4 (147-188)||(28654531-28654572)
[»] scaffold0003 (1 HSPs)
scaffold0003 (4-129)||(10308-10428)
[»] chr6 (2 HSPs)
chr6 (3-129)||(24540586-24540709)
chr6 (83-129)||(15277902-15277948)
[»] scaffold0172 (1 HSPs)
scaffold0172 (147-188)||(34744-34785)
[»] chr2 (1 HSPs)
chr2 (147-184)||(29963192-29963229)


Alignment Details
Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 6818504 - 6818622
Alignment:
Q  4 atcactccacgcactttcgtaggtgtatatgtgaatatatttgtattgtaataattatcatagtggtgttgnnnnnnnnaaatgaatgctatgtgttata 103  Q
    |||||||||||| |||  ||| |||||||| || ||||||||||||||| |||||||||||||||||||||        ||||||||| ||| |||||||    
T  6818504 atcactccacgcgcttatgtacgtgtatatttgtatatatttgtattgtgataattatcatagtggtgttg--tttttgaaatgaatgttatctgttata 6818601  T
Q  104 tgttggtgttgtgataattat 124  Q
    ||||| |||||||||||||||    
T  6818602 tgttgttgttgtgataattat 6818622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 5537215 - 5537092
Alignment:
Q  4 atcactccacgcactttcgtaggtgtatatgtgaatatatttgtattgtaataattatcatagtggtgttgnnnnnnnnaaatgaatg-ctatgtgttat 102  Q
    |||||||||||| ||| |||| ||||||||||| ||||| |||| | || |||||||||||| ||||||||        |||||||||  ||||||||||    
T  5537215 atcactccacgcgcttccgtacgtgtatatgtgtatataattgtgtagtgataattatcataatggtgttg---ttttgaaatgaatgattatgtgttat 5537119  T
Q  103 atgttggtgttgtgataattatcttgg 129  Q
    ||  |||||||||||||||||||||||    
T  5537118 atagtggtgttgtgataattatcttgg 5537092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 44668827 - 44668948
Alignment:
Q  4 atcactccacgcactttcgtaggtgtatatgtgaatatatttgtattgtaataattatcatagtggtgttgnnnnnnnnaaatgaatgctatgtgttata 103  Q
    ||||||| |||| ||| |||| |||||| ||||||||||||||| |||| || |||||||||||| |||||        || |||||| |||||| ||||    
T  44668827 atcactctacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttg----tttgaagtgaatgttatgtgctata 44668922  T
Q  104 tgttggtgttgtgataattatcttgg 129  Q
    | |||||| |||||||||||||||||    
T  44668923 tattggtgatgtgataattatcttgg 44668948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 3897452 - 3897397
Alignment:
Q  133 agagctactattgcaaaggtaagggtatcactccacgcgcttccatacgtgtatat 188  Q
    ||||||||||||| ||||||||||||||||||||||| | |||| |||||||||||    
T  3897452 agagctactattgtaaaggtaagggtatcactccacgtgtttccgtacgtgtatat 3897397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 44668808 - 44668854
Alignment:
Q  140 ctattgcaaaggtaagggtatcactccacgcgcttccatacgtgtat 186  Q
    |||||| ||||||||||| ||||||| |||||||||| |||||||||    
T  44668808 ctattgtaaaggtaagggcatcactctacgcgcttccgtacgtgtat 44668854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 5537231 - 5537186
Alignment:
Q  143 ttgcaaaggtaagggtatcactccacgcgcttccatacgtgtatat 188  Q
    ||||||||||||  | |||||||||||||||||| |||||||||||    
T  5537231 ttgcaaaggtaacagcatcactccacgcgcttccgtacgtgtatat 5537186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 36017890 - 36018013
Alignment:
Q  4 atcactccacgcactttcgtaggtgtatatgtgaatatatttgtattgtaataattatcatagtggtgttgnnnnnnnnaaatgaatg-ctatgtgttat 102  Q
    |||||||||||  ||| |||| ||||||||||| ||||| |||| |||| |||||||||||| ||||||||        |||||||||  ||||||||||    
T  36017890 atcactccacgtgcttccgtacgtgtatatgtgtatataattgtgttgtgataattatcatattggtgttg---ttttgaaatgaatgattatgtgttat 36017986  T
Q  103 atgttggtgttgtgataattatcttgg 129  Q
    || ||||||||||||||||||||||||    
T  36017987 atattggtgttgtgataattatcttgg 36018013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 11283511 - 11283388
Alignment:
Q  4 atcactccacgcactttcgtaggtgtatatgtgaatatatttgtattgtaataattatcatagtggtgttgnnnnnnnnaaatgaatgct-atgtgttat 102  Q
    |||||||||||| ||| |||| |||||||||||  |||| |||| |||| |||||||||||| || |||||        ||||||||| | |||||||||    
T  11283511 atcactccacgcgcttccgtacgtgtatatgtgtgtataattgtgttgtgataattatcataatgatgttgtttag---aaatgaatgattatgtgttat 11283415  T
Q  103 atgttggtgttgtgataattatcttgg 129  Q
    || ||||||||||||||||||||||||    
T  11283414 atattggtgttgtgataattatcttgg 11283388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 126
Target Start/End: Complemental strand, 48187489 - 48187370
Alignment:
Q  4 atcactccacgcactttcgtaggtgtatatgtgaatatatttgtattgtaataattatcatagtggtgttgnnnnnnnnaaatgaatgctatgtgttata 103  Q
    |||||||||||| ||| | || |||||| ||||||||||||||| |||| || |||||||||||| |||||        || ||||||||||||| ||||    
T  48187489 atcactccacgcgcttccatacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttg---ttttgaagtgaatgctatgtgctata 48187393  T
Q  104 tgttggtgttgtgataattatct 126  Q
    | |||||| ||||||||||||||    
T  48187392 tattggtgatgtgataattatct 48187370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 12528863 - 12528816
Alignment:
Q  141 tattgcaaaggtaagggtatcactccacgcgcttccatacgtgtatat 188  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  12528863 tattgcaaaggtaagggcatcactccacgcgcttccgtacgtgtatat 12528816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 16421596 - 16421716
Alignment:
Q  4 atcactccacgcactttcgtaggtgtatatgtgaatatatttgtattgtaataattatcatagtggtgttgnnnnnnnnaaatgaatgctatgtgttata 103  Q
    |||||||||||||| | |||| |||||| ||||| |||  |||| |||| || |||||||||||| |||||        || ||||||||||||||||||    
T  16421596 atcactccacgcacgtccgtacgtgtatgtgtgactat--ttgtgttgtgatgattatcatagtgttgttgttttg---aagtgaatgctatgtgttata 16421690  T
Q  104 tgttggtgttgtgataattatcttgg 129  Q
    | |||||| |||||||||||||||||    
T  16421691 tattggtgatgtgataattatcttgg 16421716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 21268335 - 21268213
Alignment:
Q  4 atcactccacgcactttcgtaggtgtatatgtgaatatatttgtattgtaataattatcatagtggtgttgnnnnnnnnaaatgaatgctatgtgttata 103  Q
    |||||| ||||| ||| |||| |||||| |||| |||||||||| |||| || ||||| |||||| |||||        |||||| ||||||||| ||||    
T  21268335 atcacttcacgcgcttccgtacgtgtatgtgtgtatatatttgtgttgtgatgattattatagtgttgttgttttg---aaatgagtgctatgtgctata 21268239  T
Q  104 tgttggtgttgtgataattatcttgg 129  Q
    | |||||| |||||||||||||||||    
T  21268238 tattggtgatgtgataattatcttgg 21268213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 36017872 - 36017919
Alignment:
Q  141 tattgcaaaggtaagggtatcactccacgcgcttccatacgtgtatat 188  Q
    ||||||||||||||||| ||||||||||| |||||| |||||||||||    
T  36017872 tattgcaaaggtaagggcatcactccacgtgcttccgtacgtgtatat 36017919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 48187501 - 48187462
Alignment:
Q  147 aaaggtaagggtatcactccacgcgcttccatacgtgtat 186  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  48187501 aaaggtaagggcatcactccacgcgcttccatacgtgtat 48187462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 16483984 - 16484042
Alignment:
Q  4 atcactccacgcactttcgtaggtgtatatgtgaatatatttgtattgtaataattatc 62  Q
    |||||||||||| ||| |||| ||||||||||| |||||||||| |||| |||||||||    
T  16483984 atcactccacgcgcttccgtacgtgtatatgtgtatatatttgtgttgtgataattatc 16484042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 12528845 - 12528722
Alignment:
Q  4 atcactccacgcactttcgtaggtgtatatgtgaatatatttgtattgtaataattatcatagtggtgttgnnnnnnnnaaatgaatg-ctatgtgttat 102  Q
    |||||||||||| ||| |||| ||||||||||| ||||| |||| || | |||||| ||||| ||||||||        |||||||||  ||||||||||    
T  12528845 atcactccacgcgcttccgtacgtgtatatgtgtatataattgtgttatgataattgtcataatggtgttg---ttttgaaatgaatgattatgtgttat 12528749  T
Q  103 atgttggtgttgtgataattatcttgg 129  Q
    ||  || ||||||||||||||||||||    
T  12528748 ataatgatgttgtgataattatcttgg 12528722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 16483968 - 16484013
Alignment:
Q  143 ttgcaaaggtaagggtatcactccacgcgcttccatacgtgtatat 188  Q
    |||| |||||||||| |||||||||||||||||| |||||||||||    
T  16483968 ttgcgaaggtaagggcatcactccacgcgcttccgtacgtgtatat 16484013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 11283522 - 11283482
Alignment:
Q  148 aaggtaagggtatcactccacgcgcttccatacgtgtatat 188  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  11283522 aaggtaagggcatcactccacgcgcttccgtacgtgtatat 11283482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 21268351 - 21268308
Alignment:
Q  143 ttgcaaaggtaagggtatcactccacgcgcttccatacgtgtat 186  Q
    ||||||||||||||| |||||| ||||||||||| |||||||||    
T  21268351 ttgcaaaggtaagggcatcacttcacgcgcttccgtacgtgtat 21268308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 1311417 - 1311540
Alignment:
Q  3 tatcactccacgcactttcgtaggtgtatatgtgaatatatttgtattgtaataattatcatagtggtgttgnnnnnnnnaaatgaatgctatgtgttat 102  Q
    ||||||||||||| ||| |||| |||||| ||||||||||||||| |||| || ||||| |||||| |||||        || ||||| |||||||||||    
T  1311417 tatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattattatagtgttgttg---ttttgaagtgaatactatgtgttat 1311513  T
Q  103 atgttggtgttgtgataattatcttgg 129  Q
    || |||||| |||||||||||||||||    
T  1311514 atattggtgatgtgataattatcttgg 1311540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 19932652 - 19932705
Alignment:
Q  133 agagctactattgcaaaggtaagggtatcactccacgcgcttccatacgtgtat 186  Q
    ||||||||||||| ||||||||||| |||||||||||||||||| |||||||||    
T  19932652 agagctactattgtaaaggtaagggcatcactccacgcgcttccgtacgtgtat 19932705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 11035023 - 11034923
Alignment:
Q  27 tgtatatgtgaatatatttgtattgtaataattatcatagtggtgttgnnnnnnnnaaatgaatgct-atgtgttatatgttggtgttgtgataattatc 125  Q
    |||||||||| ||||| |||| |||| |||||||||||| || |||||        ||||||||| | ||||||||||| ||||||||||||||||||||    
T  11035023 tgtatatgtgtatataattgtgttgtgataattatcataatgatgttgttttg---aaatgaatgattatgtgttatatattggtgttgtgataattatc 11034927  T
Q  126 ttgg 129  Q
    ||||    
T  11034926 ttgg 11034923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 1311404 - 1311445
Alignment:
Q  145 gcaaaggtaagggtatcactccacgcgcttccatacgtgtat 186  Q
    ||||| ||||| |||||||||||||||||||| |||||||||    
T  1311404 gcaaatgtaagagtatcactccacgcgcttccgtacgtgtat 1311445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 18153339 - 18153462
Alignment:
Q  4 atcactccacgcactttcgtaggtgtatatgtgaatatatttgtattgtaataattatcatagtggtgttgnnnnnnnnaaatgaatg-ctatgtgttat 102  Q
    |||||||||||| ||| |||| ||||||||||| ||||| |||| | || |||||||||||| ||||||||        |||||||||  ||||||||||    
T  18153339 atcactccacgcgcttccgtacgtgtatatgtgtatataattgtgtggtgataattatcataatggtgttg---ttttgaaatgaatgattatgtgttat 18153435  T
Q  103 atgttggtgttgtgataattatcttgg 129  Q
    || ||||||||||||||||||||||||    
T  18153436 atattggtgttgtgataattatcttgg 18153462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 18901883 - 18901936
Alignment:
Q  133 agagctactattgcaaaggtaagggtatcactccacgcgcttccatacgtgtat 186  Q
    |||| |||| |||||||||||||||||||| ||||||||||||| |||||||||    
T  18901883 agagttactgttgcaaaggtaagggtatcattccacgcgcttccgtacgtgtat 18901936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 18901908 - 18902031
Alignment:
Q  3 tatcactccacgcactttcgtaggtgtatatgtgaatatatttgtattgtaataattatcatagtggtgttgnnnnnnnnaaatgaatgctatgtgttat 102  Q
    ||||| ||||||| ||| |||| |||||| ||||||||||||||| |||| || ||||| |||||| |||||        || |||||| |||||| |||    
T  18901908 tatcattccacgcgcttccgtacgtgtatttgtgaatatatttgtgttgtgatgattattatagtgttgttg---ttttgaagtgaatgatatgtgctat 18902004  T
Q  103 atgttggtgttgtgataattatcttgg 129  Q
    || |||||| ||||||| |||||||||    
T  18902005 atattggtgatgtgatagttatcttgg 18902031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 18153328 - 18153368
Alignment:
Q  148 aaggtaagggtatcactccacgcgcttccatacgtgtatat 188  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  18153328 aaggtaagggcatcactccacgcgcttccgtacgtgtatat 18153368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 51783608 - 51783566
Alignment:
Q  133 agagctactattgcaaaggtaagggtatcactccacgcgcttc 175  Q
    |||||||||||||||||||||| || ||||||||||| |||||    
T  51783608 agagctactattgcaaaggtaaaggcatcactccacgtgcttc 51783566  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 15418864 - 15418986
Alignment:
Q  4 atcactccacgcactttcgtaggtgtatatgtgaatatatttgtattgtaataattatcatagtggtgttgnnnnnnnnaaatgaatgctatgtgttata 103  Q
    |||||||||| | ||| |||| || ||| ||||||||||||||| |||| || |||||||||||| |||||        || |||||||||||| |||||    
T  15418864 atcactccacacgcttccgtacgtatatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttg---aagtgaatgctatgttttata 15418960  T
Q  104 tgttggtgttgtgataattatcttgg 129  Q
    | |||||| |||||||||||||||||    
T  15418961 tattggtgatgtgataattatcttgg 15418986  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 28654560 - 28654437
Alignment:
Q  4 atcactccacgcactttcgtaggtgtatatgtgaatatatttgtattgtaataattatcatagtggtgttgnnnnnnnnaaatgaatgct-atgtgttat 102  Q
    ||||||||||||  || |||| ||||||||||| ||||| || | |||| |||||||||||| ||| ||||        ||||||||| | |||||||||    
T  28654560 atcactccacgcgtttccgtacgtgtatatgtgtatataattctgttgtgataattatcataatggggttgttttg---aaatgaatgattatgtgttat 28654464  T
Q  103 atgttggtgttgtgataattatcttgg 129  Q
    || ||||||||||||||||||||||||    
T  28654463 atattggtgttgtgataattatcttgg 28654437  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 52944710 - 52944765
Alignment:
Q  133 agagctactattgcaaaggtaagggtatcactccacgcgcttccatacgtgtatat 188  Q
    |||||||||||||  |||||||||| |||||||||| ||||||| ||| |||||||    
T  52944710 agagctactattgagaaggtaagggcatcactccacacgcttccgtacatgtatat 52944765  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 28654572 - 28654531
Alignment:
Q  147 aaaggtaagggtatcactccacgcgcttccatacgtgtatat 188  Q
    ||||||||||| ||||||||||||| |||| |||||||||||    
T  28654572 aaaggtaagggcatcactccacgcgtttccgtacgtgtatat 28654531  T

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Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 10308 - 10428
Alignment:
Q  4 atcactccacgcactttcgtaggtgtatatgtgaatatatttgtattgtaataattatcatagtggtgttgnnnnnnnnaaatgaatgctatgtgttata 103  Q
    |||||||||||||| | |||| |||||| ||||| |||  |||| |||| || |||||||||||| |||||        || ||||||||||||||||||    
T  10308 atcactccacgcacgtccgtacgtgtatgtgtgactat--ttgtgttgtgatgattatcatagtgttgttgttttg---aagtgaatgctatgtgttata 10402  T
Q  104 tgttggtgttgtgataattatcttgg 129  Q
    | |||||| |||||||||||||||||    
T  10403 tattggtgatgtgataattatcttgg 10428  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 24540586 - 24540709
Alignment:
Q  3 tatcactccacgcactttcgtaggtgtatatgtgaatatatttgtattgtaataattatcatagtggtgttgnnnnnnnnaaatgaatgctatgtgttat 102  Q
    ||||||||||| | ||| |||| || ||| ||||||||||||||| |||| || ||||||||| || |||||        || |||||||||||| ||||    
T  24540586 tatcactccacacgcttccgtacgtttatgtgtgaatatatttgtgttgtgatgattatcatattgttgttgttttg---aagtgaatgctatgttttat 24540682  T
Q  103 atgttggtgttgtgataattatcttgg 129  Q
    || |||||| |||||||||||||||||    
T  24540683 atattggtgatgtgataattatcttgg 24540709  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 15277902 - 15277948
Alignment:
Q  83 aaatgaatgctatgtgttatatgttggtgttgtgataattatcttgg 129  Q
    |||||||||||||||||||||| |||||| | |||||||||||||||    
T  15277902 aaatgaatgctatgtgttatatattggtggtatgataattatcttgg 15277948  T

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Target: scaffold0172 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 34785 - 34744
Alignment:
Q  147 aaaggtaagggtatcactccacgcgcttccatacgtgtatat 188  Q
    ||||||||||| ||||||||||||| |||| |||||||||||    
T  34785 aaaggtaagggcatcactccacgcgtttccgtacgtgtatat 34744  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 29963229 - 29963192
Alignment:
Q  147 aaaggtaagggtatcactccacgcgcttccatacgtgt 184  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  29963229 aaaggtaaggatatcactccacgcgcttccgtacgtgt 29963192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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