View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3485_high_6 (Length: 475)
Name: NF3485_high_6
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 40256332 - 40256051
Alignment:
| Q |
18 |
attagttactaatgtgaagattgaaagttcttcctattgtttgccgttnnnnnnnnnnnnnngttcttcctgttgttatgaattttgtgtggagattgtt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40256332 |
attagttactaatgtgaagattgaaagttcttcctattgtttgccgttaaaaaaataaaaa-gttcttcctattgttatgaattttgtgtggagattgtt |
40256234 |
T |
|
| Q |
118 |
gcatgactgcatccctacatagtctaggattcaaactaaaggaattatttgtgatcagacttgtgtccggtgcaatgacagtgtcaaaactcaaaagttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40256233 |
gcatgactgcatccctacatagtctaggattcaaactaaaggaattatttgtgatcagacttgtgtccggtgtaatgacagtgtcaaaactcaaaagttc |
40256134 |
T |
|
| Q |
218 |
tcatcatttgctgaaattgaaattgttaatttaagcaaaatgcatcccaagttggtggagcttgagatgaaaaaattgaagac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40256133 |
tcatcatttgctgaaattgaaattgttaatttaagcaaaatgcatcccaagttggtggagcttgagatgaaaaaattgaagac |
40256051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 372 - 463
Target Start/End: Complemental strand, 40255983 - 40255892
Alignment:
| Q |
372 |
gacattattggcataaattttaaataagttatctacaactaaatacttaaaattaaattggtccaaaatattaatgtcaaactggtcccctt |
463 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40255983 |
gacattattggcataaattttaaatgagttatctacaactaaatacttaaaattaaattggtccaaaatattaatgtcaaactggtcccctt |
40255892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University