View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3485_low_11 (Length: 443)

Name: NF3485_low_11
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3485_low_11
NF3485_low_11
[»] chr1 (33 HSPs)
chr1 (225-443)||(50509065-50509288)
chr1 (77-223)||(42267304-42267448)
chr1 (79-223)||(9443573-9443715)
chr1 (104-221)||(10303926-10304043)
chr1 (81-144)||(34849091-34849152)
chr1 (77-217)||(6367569-6367707)
chr1 (80-201)||(34850351-34850470)
chr1 (77-217)||(17662133-17662271)
chr1 (77-133)||(37578475-37578529)
chr1 (77-139)||(13245935-13245995)
chr1 (77-134)||(1103551-1103606)
chr1 (77-134)||(1841549-1841604)
chr1 (77-134)||(14879061-14879116)
chr1 (77-198)||(22103789-22103908)
chr1 (77-217)||(4960547-4960685)
chr1 (104-201)||(25647907-25648004)
chr1 (104-217)||(36694556-36694669)
chr1 (104-217)||(36710657-36710770)
chr1 (78-134)||(40210654-40210708)
chr1 (77-217)||(46163037-46163175)
chr1 (77-152)||(21444666-21444739)
chr1 (60-139)||(27999117-27999194)
chr1 (113-217)||(40435352-40435456)
chr1 (104-139)||(10304163-10304198)
chr1 (77-134)||(13914350-13914405)
chr1 (104-138)||(16970843-16970877)
chr1 (77-134)||(24009824-24009879)
chr1 (77-134)||(32917350-32917405)
chr1 (77-134)||(42248563-42248618)
chr1 (104-201)||(26024446-26024543)
chr1 (117-170)||(32927312-32927365)
chr1 (104-201)||(41098756-41098853)
chr1 (77-144)||(34464732-34464797)
[»] chr6 (13 HSPs)
chr6 (286-443)||(10782614-10782769)
chr6 (105-216)||(10782417-10782528)
chr6 (113-217)||(26463186-26463290)
chr6 (77-217)||(21627996-21628134)
chr6 (120-216)||(1215015-1215111)
chr6 (77-152)||(1215149-1215222)
chr6 (77-144)||(24210611-24210676)
chr6 (77-144)||(33647043-33647108)
chr6 (77-134)||(3059347-3059402)
chr6 (77-134)||(12080726-12080781)
chr6 (77-134)||(33517624-33517679)
chr6 (104-192)||(30725791-30725879)
chr6 (113-149)||(31406953-31406989)
[»] chr4 (24 HSPs)
chr4 (13-152)||(52298099-52298231)
chr4 (114-198)||(52298304-52298388)
chr4 (81-223)||(41583518-41583658)
chr4 (81-223)||(40387468-40387608)
chr4 (77-134)||(35028281-35028336)
chr4 (77-210)||(53701826-53701957)
chr4 (77-217)||(14801743-14801881)
chr4 (77-217)||(52909260-52909398)
chr4 (155-223)||(52295532-52295600)
chr4 (104-195)||(43155804-43155895)
chr4 (77-130)||(17356205-17356256)
chr4 (77-134)||(34765663-34765718)
chr4 (77-134)||(37976436-37976491)
chr4 (80-145)||(48528551-48528614)
chr4 (13-99)||(29321128-29321210)
chr4 (104-217)||(54087003-54087116)
chr4 (74-133)||(10781764-10781821)
chr4 (74-133)||(24349765-24349822)
chr4 (77-134)||(15507956-15508011)
chr4 (80-145)||(48529862-48529925)
chr4 (85-134)||(50418928-50418975)
chr4 (77-133)||(16605693-16605747)
chr4 (104-201)||(27934555-27934652)
chr4 (77-156)||(7280389-7280466)
[»] chr2 (21 HSPs)
chr2 (77-221)||(2940938-2941081)
chr2 (108-223)||(6846785-6846900)
chr2 (77-201)||(10840499-10840621)
chr2 (77-221)||(11721373-11721515)
chr2 (113-216)||(6848051-6848154)
chr2 (113-223)||(11349522-11349632)
chr2 (120-223)||(10841700-10841803)
chr2 (86-223)||(17266399-17266534)
chr2 (77-221)||(11689544-11689686)
chr2 (77-229)||(15848083-15848233)
chr2 (104-223)||(16105553-16105672)
chr2 (77-134)||(36755183-36755238)
chr2 (104-223)||(17266638-17266759)
chr2 (105-151)||(11347496-11347542)
chr2 (77-134)||(37895630-37895685)
chr2 (77-210)||(44714044-44714175)
chr2 (113-217)||(3555257-3555361)
chr2 (77-216)||(36382169-36382306)
chr2 (116-223)||(39935457-39935563)
chr2 (77-134)||(39423605-39423660)
chr2 (108-144)||(3653392-3653428)
[»] chr5 (20 HSPs)
chr5 (113-223)||(15645029-15645139)
chr5 (77-223)||(12904755-12904899)
chr5 (117-223)||(5326058-5326164)
chr5 (77-217)||(19892591-19892729)
chr5 (113-223)||(42067841-42067951)
chr5 (77-201)||(13962887-13963009)
chr5 (77-217)||(39453307-39453445)
chr5 (104-223)||(14848740-14848859)
chr5 (77-159)||(29646645-29646725)
chr5 (87-217)||(35920477-35920605)
chr5 (77-134)||(32242332-32242387)
chr5 (104-210)||(38475307-38475413)
chr5 (77-217)||(5993896-5994034)
chr5 (104-217)||(16157163-16157276)
chr5 (77-217)||(35512155-35512293)
chr5 (77-135)||(10684028-10684084)
chr5 (77-134)||(8322494-8322549)
chr5 (77-134)||(11047527-11047582)
chr5 (169-217)||(18247449-18247497)
chr5 (13-57)||(40150037-40150081)
[»] chr3 (28 HSPs)
chr3 (77-217)||(33689662-33689800)
chr3 (108-222)||(30380848-30380962)
chr3 (113-223)||(25108412-25108522)
chr3 (86-217)||(40033748-40033877)
chr3 (81-223)||(44654790-44654930)
chr3 (113-223)||(1079538-1079648)
chr3 (77-134)||(26463881-26463936)
chr3 (77-217)||(9294241-9294379)
chr3 (77-149)||(41988037-41988107)
chr3 (104-223)||(20704431-20704550)
chr3 (77-223)||(20704610-20704754)
chr3 (77-159)||(43384348-43384428)
chr3 (74-139)||(39399372-39399435)
chr3 (77-217)||(40506070-40506209)
chr3 (74-139)||(54317911-54317974)
chr3 (77-217)||(23458262-23458400)
chr3 (174-226)||(23276361-23276413)
chr3 (106-142)||(42854517-42854553)
chr3 (104-134)||(19741200-19741230)
chr3 (114-152)||(21783813-21783851)
chr3 (77-134)||(33156277-33156332)
chr3 (77-134)||(40758234-40758289)
chr3 (81-134)||(51994173-51994224)
chr3 (104-201)||(36314575-36314672)
chr3 (104-217)||(46474822-46474935)
chr3 (112-145)||(47857561-47857594)
chr3 (104-201)||(48322654-48322751)
chr3 (113-217)||(32431509-32431613)
[»] chr7 (22 HSPs)
chr7 (104-222)||(11400277-11400394)
chr7 (105-223)||(15714601-15714719)
chr7 (77-217)||(28469291-28469429)
chr7 (77-134)||(32053426-32053481)
chr7 (85-201)||(6571036-6571150)
chr7 (105-222)||(7356507-7356623)
chr7 (117-222)||(17204890-17204995)
chr7 (104-223)||(20563735-20563854)
chr7 (83-217)||(45010893-45011025)
chr7 (77-134)||(2640461-2640516)
chr7 (117-217)||(20426651-20426751)
chr7 (113-223)||(12229389-12229498)
chr7 (105-199)||(13311342-13311436)
chr7 (77-134)||(23181277-23181332)
chr7 (77-138)||(38643636-38643695)
chr7 (77-134)||(40379859-40379914)
chr7 (77-134)||(42731509-42731564)
chr7 (105-150)||(13311146-13311191)
chr7 (146-223)||(23608809-23608886)
chr7 (82-134)||(27396883-27396933)
chr7 (114-195)||(32687426-32687507)
chr7 (13-57)||(22245539-22245583)
[»] scaffold0220 (1 HSPs)
scaffold0220 (72-223)||(23232-23381)
[»] chr8 (19 HSPs)
chr8 (77-159)||(24085839-24085919)
chr8 (79-227)||(9499883-9500028)
chr8 (77-222)||(22890277-22890420)
chr8 (77-217)||(4405943-4406081)
chr8 (77-217)||(13186067-13186205)
chr8 (77-217)||(16388809-16388947)
chr8 (77-217)||(39071683-39071821)
chr8 (13-99)||(9337149-9337231)
chr8 (77-192)||(36928508-36928621)
chr8 (79-139)||(2693802-2693860)
chr8 (104-201)||(23663822-23663919)
chr8 (77-132)||(31608796-31608849)
chr8 (85-195)||(23698535-23698643)
chr8 (107-166)||(31872946-31873005)
chr8 (77-159)||(35756647-35756727)
chr8 (104-195)||(36325263-36325354)
chr8 (113-223)||(2535867-2535977)
chr8 (105-198)||(20050109-20050202)
chr8 (105-201)||(11674718-11674814)
[»] scaffold0005 (1 HSPs)
scaffold0005 (77-217)||(37846-37984)
[»] scaffold0031 (1 HSPs)
scaffold0031 (77-134)||(69055-69110)
[»] scaffold0027 (1 HSPs)
scaffold0027 (79-159)||(14076-14153)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 225 - 443
Target Start/End: Complemental strand, 50509288 - 50509065
Alignment:
Q  225 ttacataaatactaaaggtacattttgtttgctacatcttttaaaaacattttcaaaatactatatgaattgaattatttttagaatnnnnnnncaaaat 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  50509288 ttacataaatactaaaggtacattttgtttgctacatcttttaaaaacattttcaaaatactatatgaattgaattatttttagaat--aaaaacaaaat 50509191  T
Q  325 agatttacctcttcttttttaactg-----taggtgaaggcccttcc--nnnnnnnnggctttctgtgcctgatcttttttgatagcatcaactagcata 417  Q
    |||||||||||||||||||| ||||     |||| ||||||||||||          |||||||||||||||||||||||||||||||||||||||||||    
T  50509190 agatttacctcttcttttttcactgtaggataggagaaggcccttccttttttttttggctttctgtgcctgatcttttttgatagcatcaactagcata 50509091  T
Q  418 tccacatattgtctagtgcctgagtc 443  Q
    |||| | ||||| |||||||||||||    
T  50509090 tccataaattgtttagtgcctgagtc 50509065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 42267448 - 42267304
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    ||||||||||||  |||||||||| |  ||||||| |||||||| ||||||||||||||||||  |||||||| ||||||||| ||  ||| |||  |||    
T  42267448 attagtgacgtggtagtgattaagtg--gggagagagacgaaatattaaatgattaaattttggcaggacaaattgtcaggattaaagaatacagggacc 42267351  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatataaaagc 223  Q
    || ||||||| ||||||||||||||| ||  ||||||||||||||||    
T  42267350 aatttttaaatgacccctatttgcagggaataaacacatataaaagc 42267304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 9443715 - 9443573
Alignment:
Q  79 tagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaa 178  Q
    ||||||| ||||| |||||||| | |||||| |  || |||||||||||||||||||||||  ||||||||||| |||||| ||  ||| |||| ||||     
T  9443715 tagtgacttgacaatgattaagtggggggaggg--accaaattttaaatgattaaattttgggaggacaaaatgccaggattaaggaatacagagaccat 9443618  T
Q  179 attttaaacgacccctatttgcagagatgaaacacatataaaagc 223  Q
     ||||||| ||||||||||||||  ||  ||||||||||||||||    
T  9443617 tttttaaatgacccctatttgcaaggactaaacacatataaaagc 9443573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 221
Target Start/End: Complemental strand, 10304043 - 10303926
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcaga 203  Q
    |||||||| ||||||||||||||||||||||||||| |||| |||| || |||||| ||| ||| || | | ||  ||||||| ||| ||||||||||||    
T  10304043 ggggagagggacgaaattttaaatgattaaattttggaagggcaaattgccaggattaacgaatacatagatcattttttaaatgactcctatttgcaga 10303944  T
Q  204 gatgaaacacatataaaa 221  Q
    ||  ||||||||||||||    
T  10303943 gaccaaacacatataaaa 10303926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 34849152 - 34849091
Alignment:
Q  81 gtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaagg 144  Q
    |||||||| |||||||||||  ||||||||| ||||||||||||||||||||||||||||||||    
T  34849152 gtgacgtggcagtgattaag--aggggagagggacgaaattttaaatgattaaattttgcaagg 34849091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 6367707 - 6367569
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||| ||||||||||| |  ||||||| ||||||||||||||||||||||   |||||||  ||| || |||||| | | | | |||  |||    
T  6367707 attagtgacgtggcagtgattaagtg--gggagagggacgaaattttaaatgattaaacaatgcaagggtaaattgccaggattagcgattacagggacc 6367610  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || |||||||||||||||| |||||  ||||||| ||||||    
T  6367609 aatttttaaacgacccctaattgcaaggatgaaatacatat 6367569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 34850351 - 34850470
Alignment:
Q  80 agtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaa 179  Q
    ||||||||| ||||||||||| |  ||||||| || |||||||||||||||||||||||||||||  ||  ||  ||||| | | ||| |||  |||||     
T  34850351 agtgacgtggcagtgattaagtg--gggagagggatgaaattttaaatgattaaattttgcaagggtaatttgcaaggattagcgaatacagggaccaat 34850448  T
Q  180 ttttaaacgacccctatttgca 201  Q
    |||||||||||||||| |||||    
T  34850449 ttttaaacgacccctaattgca 34850470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 17662133 - 17662271
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||| ||||||||||| |  || |||| ||||||||||||||||||||||   |||||||  ||| || |||||| ||| | |  || ||||    
T  17662133 attagtgacgtggcagtgattaagtg--ggaagagggacgaaattttaaatgattaaacaatgcaagggtaaattgccaggattaacgattaaaggaacc 17662230  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || |||||||||||||| | |||||  ||||||| ||||||    
T  17662231 aatttttaaacgaccccaaattgcaaggatgaaatacatat 17662271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 37578475 - 37578529
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaa 133  Q
    |||||||||||| ||||||||||| |  |||||||||||||||||||||||||||||    
T  37578475 attagtgacgtggcagtgattaagtg--gggagagtgacgaaattttaaatgattaa 37578529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 13245995 - 13245935
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttg 139  Q
    |||||||||||||||||||||||| |  ||||||| ||| ||||||||| |||||||||||||    
T  13245995 attagtgacgtgacagtgattaagtg--gggagagggacaaaattttaagtgattaaattttg 13245935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 1103606 - 1103551
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    ||||||||| |||||||||||||| |  ||||||| ||||||||||||||||||||||    
T  1103606 attagtgacatgacagtgattaagtg--gggagagggacgaaattttaaatgattaaa 1103551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 1841604 - 1841549
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    ||||||||| || ||||||||||| |  ||||||||||||||||||||||||||||||    
T  1841604 attagtgacatggcagtgattaagtg--gggagagtgacgaaattttaaatgattaaa 1841549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 14879116 - 14879061
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    ||||||||| |||||||||||||| |  ||||||| ||||||||||||||||||||||    
T  14879116 attagtgacatgacagtgattaagtg--gggagagggacgaaattttaaatgattaaa 14879061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 198
Target Start/End: Original strand, 22103789 - 22103908
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||| ||||||||||| |  | ||||| ||||||||||||| |||||||||||||  ||| ||||||  |||||| || |||| ||   |||    
T  22103789 attagtgacgtggcagtgattaagtg--gagagagggacgaaattttaagtgattaaattttgacagggcaaaatagcaggattaaaaaatacatggacc 22103886  T
Q  177 aaattttaaacgacccctattt 198  Q
    |  ||||||| |||||||||||    
T  22103887 attttttaaatgacccctattt 22103908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 4960685 - 4960547
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||| ||||||||||| |  || |||| ||||||||||||||||||||||   |||||||  ||| ||  ||||| | | ||| || | | |    
T  4960685 attagtgacgtggcagtgattaagtg--ggaagagggacgaaattttaaatgattaaacaatgcaagggtaaattgcaaggattagcgaatacaaagagc 4960588  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || |||||||||||||||| |||||  ||||||| ||||||    
T  4960587 aatttttaaacgacccctaattgcaatgatgaaatacatat 4960547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 25648004 - 25647907
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgca 201  Q
    |||||||| |||||||||||||||||||||||  |||| ||  ||| || |||||| ||| | | |||  ||||| |||||||||||||||| |||||    
T  25648004 ggggagagggacgaaattttaaatgattaaataatgcaggggtaaattgccaggattaacgattacagggaccaatttttaaacgacccctaattgca 25647907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 36694556 - 36694669
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcaga 203  Q
    |||||||| ||||||||||||||||||||||   |||||||  ||| ||||||||| | | | | |||| ||||| |||||||| || |||| |||||      
T  36694556 ggggagagagacgaaattttaaatgattaaacaatgcaagggtaaattgtcaggattagcgattacagagaccaatttttaaacaacacctaattgcaag 36694655  T
Q  204 gatgaaacacatat 217  Q
    ||||||| ||||||    
T  36694656 gatgaaatacatat 36694669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 36710657 - 36710770
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcaga 203  Q
    |||||||| ||||||||||||||||||||||   |||||||  ||| ||||||||| | | | | |||| ||||| |||||||| || |||| |||||      
T  36710657 ggggagagagacgaaattttaaatgattaaacaatgcaagggtaaattgtcaggattagcgattacagagaccaatttttaaacaacacctaattgcaag 36710756  T
Q  204 gatgaaacacatat 217  Q
    ||||||| ||||||    
T  36710757 gatgaaatacatat 36710770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 40210654 - 40210708
Alignment:
Q  78 ttagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    ||||||||||| ||||||||||| |  ||||||| ||||||||||||||||||||||    
T  40210654 ttagtgacgtggcagtgattaagtg--gggagagggacgaaattttaaatgattaaa 40210708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 46163175 - 46163037
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    ||||||||| ||||||| |||||| |  ||||||| ||||||||||||||||||||||   |||||||  ||| ||||||||| | | | | ||   |||    
T  46163175 attagtgacatgacagtaattaagtg--gggagagagacgaaattttaaatgattaaacaatgcaagggtaaattgtcaggattagcgattacatggacc 46163078  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || |||||||||||||||| || ||  ||||||| ||||||    
T  46163077 aatttttaaacgacccctaattacaatgatgaaatacatat 46163037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 21444739 - 21444666
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatg 152  Q
    |||||||||||| ||||||||||| |  ||||||  ||||||||||||| |||||||||||||  |||| ||||||    
T  21444739 attagtgacgtggcagtgattaagtg--gggagatggacgaaattttaagtgattaaattttgataggataaaatg 21444666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 27999117 - 27999194
Alignment:
Q  60 cactgccgcataagcagattagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttg 139  Q
    ||||||| ||| |||| |||||||| ||| ||||||||||| |  || |||| |||||||||| ||||||||||||||||    
T  27999117 cactgccacatcagcaaattagtgaggtggcagtgattaagtg--ggaagagagacgaaatttaaaatgattaaattttg 27999194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 40435456 - 40435352
Alignment:
Q  113 gacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaaca 212  Q
    |||| ||||||||||||||||||||| || |  |||||||  ||||| ||| ||| ||   ||||| |||||||||||||||| |||||  ||||||| |    
T  40435456 gacggaattttaaatgattaaattttacaggtgcaaaatgcaaggattaacgaatacaatgaccaatttttaaacgacccctaattgcaaggatgaaata 40435357  T
Q  213 catat 217  Q
    |||||    
T  40435356 catat 40435352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 10304163 - 10304198
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttg 139  Q
    |||||||| |||||||||||||||||||||||||||    
T  10304163 ggggagagagacgaaattttaaatgattaaattttg 10304198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 13914350 - 13914405
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||||||||| |||||||| || |  ||||||| ||||||||||||||||||||||    
T  13914350 attagtgacgtggcagtgatttagtg--gggagagggacgaaattttaaatgattaaa 13914405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 16970843 - 16970877
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaatttt 138  Q
    |||||||| ||||||||||||||||||||||||||    
T  16970843 ggggagagggacgaaattttaaatgattaaatttt 16970877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 24009824 - 24009879
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||||| ||| ||||||||||| |  ||||||| ||||||||||||||||||||||    
T  24009824 attagtgatgtggcagtgattaagtg--gggagagggacgaaattttaaatgattaaa 24009879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 32917405 - 32917350
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||||| ||| ||||||||||| |  ||||||| ||||||||||||||||||||||    
T  32917405 attagtgatgtggcagtgattaagtg--gggagagagacgaaattttaaatgattaaa 32917350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 42248618 - 42248563
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||| ||||| ||||||||||| |  ||||||| ||||||||||||||||||||||    
T  42248618 attagtcacgtggcagtgattaagtg--gggagagggacgaaattttaaatgattaaa 42248563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 26024543 - 26024446
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgca 201  Q
    |||||||| |||||| |||||||||||||||   |||||||  ||| || |||||| | | | | |||| ||||| |||||||||||||||| |||||    
T  26024543 ggggagagggacgaacttttaaatgattaaacaatgcaagggtaaattgccaggattagcgattacagagaccaatttttaaacgacccctaattgca 26024446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 32927365 - 32927312
Alignment:
Q  117 aaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattca 170  Q
    ||||||||| ||||||||||||| |  |||||||||||||||| || |||||||    
T  32927365 aaattttaactgattaaattttgtagcgacaaaatgtcaggattaataaattca 32927312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 41098853 - 41098756
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgca 201  Q
    |||||| | ||| ||||||||||||||||||   |||||||  ||| ||||||||| | | | | |||| ||||| |||||||||||||||| |||||    
T  41098853 ggggagggggacaaaattttaaatgattaaacaatgcaagggtaaattgtcaggattagcgattacagagaccaatttttaaacgacccctaattgca 41098756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 34464732 - 34464797
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaagg 144  Q
    ||||||||| || ||||||||||| |  ||||||| ||| ||||||||||||||||||  ||||||||    
T  34464732 attagtgacatggcagtgattaagtg--gggagagggacaaaattttaaatgattaaacattgcaagg 34464797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 286 - 443
Target Start/End: Original strand, 10782614 - 10782769
Alignment:
Q  286 tatatgaattgaattatttttagaatnnnnnnncaaaatagatttacctcttcttttttaactgtaggtgaaggcccttccnnnnnnnnggctttctgtg 385  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||||||||        | |||||||||    
T  10782614 tatatgaattgaattatttttagaataaaaa--caaaatagatttacctcttcttttttcactgtaggtgaaggcccttccttttttttgtctttctgtg 10782711  T
Q  386 cctgatcttttttgatagcatcaactagcatatccacatattgtctagtgcctgagtc 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10782712 cctgatcttttttgatagcatcaactagcatatccacatattgtctagtgcctgagtc 10782769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 105 - 216
Target Start/End: Complemental strand, 10782528 - 10782417
Alignment:
Q  105 gggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagag 204  Q
    ||||||| ||||||||||||||||||||||||||||| | ||||||| | ||||| | ||||||||  |||||||||||||| ||||| ||||||||| |    
T  10782528 gggagagagacgaaattttaaatgattaaattttgcaggaacaaaatattaggattagcaaattcattaaccaaattttaaatgacccatatttgcaggg 10782429  T
Q  205 atgaaacacata 216  Q
    |  |||||||||    
T  10782428 actaaacacata 10782417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 26463290 - 26463186
Alignment:
Q  113 gacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaaca 212  Q
    |||||||||||||||||||||| |||||||||  ||  || |||||| ||| ||| |||  ||||| |||||||||||||||| |||||| ||| ||| |    
T  26463290 gacgaaattttaaatgattaaactttgcaagggtaatttgccaggattaacgaatacagggaccaatttttaaacgacccctaattgcagggatcaaata 26463191  T
Q  213 catat 217  Q
    |||||    
T  26463190 catat 26463186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 21627996 - 21628134
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||| ||||||||||| |  ||||||| ||| ||||||||||||||||||   |||||||  ||| ||||||||| | | | | |||  |||    
T  21627996 attagtgacgtggcagtgattaagtg--gggagagggacaaaattttaaatgattaaacaatgcaagggtaaattgtcaggattagcgattacagggacc 21628093  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || |||||| ||||||||| |||||  ||||||| ||||||    
T  21628094 aatttttaagcgacccctaattgcaaggatgaaatacatat 21628134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 1215111 - 1215015
Alignment:
Q  120 ttttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaacacata 216  Q
    |||||| |||||||||||||  ||| |||||||||||||| ||  ||| |||| ||||  ||||||| || |||||||||||| ||  |||||||||    
T  1215111 ttttaagtgattaaattttgacagggcaaaatgtcaggattaagcaatacagagaccatgttttaaatgagccctatttgcagggactaaacacata 1215015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 1215149 - 1215222
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatg 152  Q
    |||||||||||| ||||||||||| |  |||| || ||||||||||||| |||||||||||||  ||| |||||||    
T  1215149 attagtgacgtggcagtgattaagtg--gggatagggacgaaattttaagtgattaaattttgacagggcaaaatg 1215222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 24210676 - 24210611
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaagg 144  Q
    |||||||||||| | ||||||| |||  ||||||| || ||||||||||||||||||| |||||||||    
T  24210676 attagtgacgtggcggtgattaggcg--gggagagggatgaaattttaaatgattaaactttgcaagg 24210611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 33647108 - 33647043
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaagg 144  Q
    |||||||||||| ||||||||||  |  ||||||| |||||||||||||||||||||||  |||||||    
T  33647108 attagtgacgtggcagtgattaaatg--gggagagagacgaaattttaaatgattaaataatgcaagg 33647043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 3059402 - 3059347
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    ||||||||| || ||||||||||| ||||  |||| ||||||||||||||||||||||    
T  3059402 attagtgacatggcagtgattaagtgagg--agagggacgaaattttaaatgattaaa 3059347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 12080781 - 12080726
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    ||||||||| || ||||||||||| |  ||||||| ||||||||||||||||||||||    
T  12080781 attagtgacatggcagtgattaagtg--gggagagggacgaaattttaaatgattaaa 12080726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 33517679 - 33517624
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||||||||  ||||||||||| |  ||||||| ||||||||||||||||||||||    
T  33517679 attagtgacgtagcagtgattaagtg--gggagagggacgaaattttaaatgattaaa 33517624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 30725879 - 30725791
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgaccc 192  Q
    |||||||| ||||||||||||||||||||||   |||||||  ||| || |||||| | | | | |||| ||||| |||||||||||||    
T  30725879 ggggagagggacgaaattttaaatgattaaacagtgcaagggtaaattggcaggattagcgattacagagaccaatttttaaacgaccc 30725791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 31406989 - 31406953
Alignment:
Q  113 gacgaaattttaaatgattaaattttgcaaggacaaa 149  Q
    |||||||||||||||||||||||  ||||||||||||    
T  31406989 gacgaaattttaaatgattaaataatgcaaggacaaa 31406953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 52298231 - 52298099
Alignment:
Q  13 taggggcattttggtccgtttgcgtaaacttttgatgtgtaagcaagcactgccgcataagcagattagtgacgtgacagtgattaagcgaggggagagt 112  Q
    ||||||||||||||||||||  ||||||||||||||||||  |||    ||||| | |||||||| |||||||||| ||||||||||| |  |||||||     
T  52298231 taggggcattttggtccgttcacgtaaacttttgatgtgtctgca----ctgccacgtaagcagaatagtgacgtggcagtgattaagtg--gggagaga 52298138  T
Q  113 gacgaaattttaaatgattaaattttgcaaggacaaaatg 152  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  52298137 gacgaaattttaaatgattaaattttgc-aggacaaaatg 52298099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 52298304 - 52298388
Alignment:
Q  114 acgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctattt 198  Q
    ||||||||||||||||||||||||||||  |||||||||  ||||| ||||||||||| |||||||||||||| |||||||||||    
T  52298304 acgaaattttaaatgattaaattttgcatagacaaaatgctaggattaacaaattcaggaaccaaattttaaatgacccctattt 52298388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 41583518 - 41583658
Alignment:
Q  81 gtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaat 180  Q
    |||||||| ||||||||||| |||   |||| ||||||||||||||||||||| ||||||| || |||  || |||||| | | ||| |||||| ||| |    
T  41583518 gtgacgtggcagtgattaagtgaga--agagggacgaaattttaaatgattaacttttgcaggggcaatttgccaggattagcgaatacagaaatcaatt 41583615  T
Q  181 tttaaacgacccctatttgcagagatgaaacacatataaaagc 223  Q
    |||||| |||||||| |||||| |||||||||||||| |||||    
T  41583616 tttaaatgacccctaattgcagggatgaaacacatattaaagc 41583658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 40387608 - 40387468
Alignment:
Q  81 gtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaat 180  Q
    |||||||| ||||||||||| |||   ||||  |||||||||||||||||||| ||||||| || |||  || |||||| | | ||| |||  ||||| |    
T  40387608 gtgacgtggcagtgattaagtgaga--agaggaacgaaattttaaatgattaacttttgcaggggcaatttgccaggattagcgaatacagggaccaatt 40387511  T
Q  181 tttaaacgacccctatttgcagagatgaaacacatataaaagc 223  Q
    |||||| | |||||| |||||| |||||||||||||| |||||    
T  40387510 tttaaatggcccctaattgcagggatgaaacacatattaaagc 40387468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 35028281 - 35028336
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||||||||| ||||||||||| |  ||||||||||||||||||||||||||||||    
T  35028281 attagtgacgtggcagtgattaagtg--gggagagtgacgaaattttaaatgattaaa 35028336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 53701957 - 53701826
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||| ||||||||||| |  ||||||| || |||||||||||||||||||   |||||||| ||| ||||||||| |   | | |||| | |    
T  53701957 attagtgacgtggcagtgattaagtg--gggagagggaagaaattttaaatgattaaacaatgcaaggataaattgtcaggattagagattacagagatc 53701860  T
Q  177 aaattttaaacgacccctatttgcagagatgaaa 210  Q
    || |||||||||||||||| |||||  |||||||    
T  53701859 aatttttaaacgacccctaattgcaaggatgaaa 53701826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 14801881 - 14801743
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||| ||||||||||| |  ||||||| ||||||||||||||||||||||   | |||||  ||| ||||||||| | | | | || | |||    
T  14801881 attagtgacgtggcagtgattaagtg--gggagagggacgaaattttaaatgattaaacaatacaagggtaaattgtcaggattagcgattacaaagacc 14801784  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || ||||||||||| |||| |||||  ||||||| ||||||    
T  14801783 aatttttaaacgactcctaattgcaaggatgaaatacatat 14801743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 52909398 - 52909260
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    ||||||||| || ||||||||||| |  ||||||  ||||||||||||||||||||||   |||||||  ||| ||||||||| | | | | |||  |||    
T  52909398 attagtgacatggcagtgattaagtg--gggagatggacgaaattttaaatgattaaacaatgcaagggtaaattgtcaggattagcgattacagtgacc 52909301  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || |||| ||||||||||| ||||| |||||||| ||||||    
T  52909300 aatttttgaacgacccctaattgcaaagatgaaatacatat 52909260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 52295600 - 52295532
Alignment:
Q  155 aggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaacacatataaaagc 223  Q
    ||||| ||||||||||   ||||||||||||||||||||||| || ||| | |||||||||||||||||    
T  52295600 aggattaacaaattcatggaccaaattttaaacgacccctatatgtagatacgaaacacatataaaagc 52295532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 195
Target Start/End: Original strand, 43155804 - 43155895
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgaccccta 195  Q
    |||||||| |||||||||||||||||||||||  |||| ||| ||| || |||||| ||| | | |||  ||||| ||||||||||||||||    
T  43155804 ggggagagggacgaaattttaaatgattaaataatgcagggataaattgccaggattaacgattacagggaccaatttttaaacgaccccta 43155895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 17356205 - 17356256
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgat 130  Q
    |||||||||||||||||||||||  | |||||||| ||||||||||||||||||    
T  17356205 attagtgacgtgacagtgattaa--gtggggagagggacgaaattttaaatgat 17356256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 34765663 - 34765718
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||||||||| ||||||||||| |  ||||||| ||||||||||||||||||||||    
T  34765663 attagtgacgtggcagtgattaagtg--gggagagggacgaaattttaaatgattaaa 34765718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 37976436 - 37976491
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    ||||||||| || ||||||||||| |  ||||||||||||||||||||||||||||||    
T  37976436 attagtgacatggcagtgattaagtg--gggagagtgacgaaattttaaatgattaaa 37976491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 48528614 - 48528551
Alignment:
Q  80 agtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaagga 145  Q
    ||||| ||||||||||||||| |  |||| ||  ||||||||||||||||||||||||||||||||    
T  48528614 agtgatgtgacagtgattaagtg--gggataggaacgaaattttaaatgattaaattttgcaagga 48528551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 29321128 - 29321210
Alignment:
Q  13 taggggcattttggtccgtttgcgtaaacttttgatgtgtaagcaagcactgccgcataagcagattagtgacgtgacagtgattaa 99  Q
    ||||||||||||||||||||  |||||| |||||||||    |  ||||||||| | |||||| |||||||||||| ||||||||||    
T  29321128 taggggcattttggtccgttcacgtaaaattttgatgt----gatagcactgccacgtaagcaaattagtgacgtggcagtgattaa 29321210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 54087003 - 54087116
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcaga 203  Q
    |||||||| ||||||||||||||||||||||   |||||||  ||| ||||| ||| ||| | | |||  ||||| |||||||||||||||| || ||      
T  54087003 ggggagagagacgaaattttaaatgattaaacaatgcaagggtaaattgtcatgattaacgattacagggaccaatttttaaacgacccctaattacaat 54087102  T
Q  204 gatgaaacacatat 217  Q
    ||||||| ||||||    
T  54087103 gatgaaatacatat 54087116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 10781764 - 10781821
Alignment:
Q  74 cagattagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaa 133  Q
    ||||||||||||||||||||| ||||  |  ||||||| |||||||||||||||||||||    
T  10781764 cagattagtgacgtgacagtggttaactg--gggagagggacgaaattttaaatgattaa 10781821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 24349822 - 24349765
Alignment:
Q  74 cagattagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaa 133  Q
    ||||||||||||||| ||||||||||  |  ||||||| |||||||||||||||||||||    
T  24349822 cagattagtgacgtggcagtgattaactg--gggagagggacgaaattttaaatgattaa 24349765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 15507956 - 15508011
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||||||| | ||||||||||| |  ||||||| ||||||||||||||||||||||    
T  15507956 attagtgacgcggcagtgattaagtg--gggagagagacgaaattttaaatgattaaa 15508011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 48529862 - 48529925
Alignment:
Q  80 agtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaagga 145  Q
    ||||||||| ||||||||||| |  | ||||| ||| ||||||||||||||||||||||| |||||    
T  48529862 agtgacgtggcagtgattaagtg--gagagagggacaaaattttaaatgattaaattttgaaagga 48529925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 50418928 - 50418975
Alignment:
Q  85 cgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||||||||||||| |  ||||||| ||||||||||||||||||||||    
T  50418928 cgtgacagtgattaagtg--gggagagggacgaaattttaaatgattaaa 50418975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 16605747 - 16605693
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaa 133  Q
    |||||||||||| ||||||||||| | |||||| |  ||||||||||||||||||||    
T  16605747 attagtgacgtggcagtgattaagtggggggaggg--acgaaattttaaatgattaa 16605693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 27934652 - 27934555
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgca 201  Q
    |||||||| |||||||||||||||||||||   ||||||||  ||| || |||||| | ||| | |||  || || |||||||||||||||| |||||    
T  27934652 ggggagagggacgaaattttaaatgattaacaattgcaaggctaaattgccaggattagcaattacagggacaaatttttaaacgacccctaattgca 27934555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 156
Target Start/End: Original strand, 7280389 - 7280466
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcag 156  Q
    |||||||||||| ||||||||||| |  ||||||| |||  |||||||| |||||||||||||  | | |||||||||||    
T  7280389 attagtgacgtggcagtgattaagtg--gggagagagacataattttaagtgattaaattttgacatggcaaaatgtcag 7280466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 2941081 - 2940938
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    ||||||||||||||| |||||||| | |||||||| ||| ||||||||||||| ||||||||| |  || ||||||  ||||| |||||||||||  |||    
T  2941081 attagtgacgtgacactgattaagtg-ggggagagggaccaaattttaaatgaataaattttgtagtgataaaatgctaggattaacaaattcagggacc 2940983  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatataaaa 221  Q
    |||||||||| ||||||||||| ||| ||  ||||||||||||||    
T  2940982 aaattttaaatgacccctatttacagggactaaacacatataaaa 2940938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 6846900 - 6846785
Alignment:
Q  108 agagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatg 207  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||| | |||| ||| ||||||   ||||| ||||||| ||||||||||||||| |||     
T  6846900 agagggacgaaattttaaatgattcaattttgcagggacaaaatgcccggattaacgaattcaaggaccaatttttaaatgacccctatttgcagggatt 6846801  T
Q  208 aaacacatataaaagc 223  Q
    ||||||||||||||||    
T  6846800 aaacacatataaaagc 6846785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 77 - 201
Target Start/End: Complemental strand, 10840621 - 10840499
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||||||||||||||| |  || |||| ||||||| ||||||||||||||||||| |  | |||||||||||||| ||  |||| || ||||    
T  10840621 attagtgacgtgacagtgattaagtg--ggaagagggacgaaagtttaaatgattaaattttgaagtggcaaaatgtcaggattaatgaattaaggaacc 10840524  T
Q  177 aaattttaaacgacccctatttgca 201  Q
    |||||||||| ||||||||||||||    
T  10840523 aaattttaaatgacccctatttgca 10840499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 77 - 221
Target Start/End: Original strand, 11721373 - 11721515
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||||||||||||||| |  ||||||| ||||||||||||| |||||||||||||  |||| ||||||||||||| ||  ||| |||  | |    
T  11721373 attagtgacgtgacagtgattaagtg--gggagagagacgaaattttaagtgattaaattttggcaggataaaatgtcaggattaaagaatacagggatc 11721470  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatataaaa 221  Q
    || ||||||| ||||||||||| || |||  ||||||||||||||    
T  11721471 aatttttaaatgacccctatttccaaagactaaacacatataaaa 11721515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 6848051 - 6848154
Alignment:
Q  113 gacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaaca 212  Q
    |||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||   ||||| ||||||| ||||| ||||||||||||  |||||    
T  6848051 gacgaaattttaaatgattaaatttttcagggacaaaatgtcaggattaacgaattcaatgaccaatttttaaatgacccttatttgcagagagtaaaca 6848150  T
Q  213 cata 216  Q
    ||||    
T  6848151 cata 6848154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 11349522 - 11349632
Alignment:
Q  113 gacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaaca 212  Q
    ||||||||||||||||||||||||||  | | ||||| ||||||||| ||| |||||| | | ||||||||||| ||| ||||||||| | ||  |||||    
T  11349522 gacgaaattttaaatgattaaattttataggtacaaactgtcaggattaacgaattcaaagatcaaattttaaatgactcctatttgctgggactaaaca 11349621  T
Q  213 catataaaagc 223  Q
    |||||||||||    
T  11349622 catataaaagc 11349632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 10841700 - 10841803
Alignment:
Q  120 ttttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaacacatataa 219  Q
    |||||||||||||||||||| |  | ||||||| |||||| ||| |||||||  |  |||||||||| ||||||||||||||| ||  ||||||||||||    
T  10841700 ttttaaatgattaaattttgaagtggcaaaatgccaggattaacgaattcagggataaaattttaaatgacccctatttgcagggactaaacacatataa 10841799  T
Q  220 aagc 223  Q
    ||||    
T  10841800 aagc 10841803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 223
Target Start/End: Complemental strand, 17266534 - 17266399
Alignment:
Q  86 gtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaa 185  Q
    ||||||||||||||| |  ||||||| ||| ||||||||||||||||||||||| ||||  ||| ||||||||| ||| ||| ||   ||||  ||||||    
T  17266534 gtgacagtgattaagtg--gggagagggaccaaattttaaatgattaaattttggaagggaaaattgtcaggataaacgaatacattgaccattttttaa 17266437  T
Q  186 acgacccctatttgcagagatgaaacacatataaaagc 223  Q
    | || |||||||| ||| ||  ||||||||||||||||    
T  17266436 atgatccctatttacagggactaaacacatataaaagc 17266399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 11689686 - 11689544
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||| ||||||||||| |  ||||||  ||||||||||||| |||||||||||||  ||||||||||| | |||| ||  ||| |||  | |    
T  11689686 attagtgacgtggcagtgattaagtg--gggagatggacgaaattttaagtgattaaattttggcaggacaaaatgccgggattaaagaatacagggatc 11689589  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatataaaa 221  Q
    || ||||||| ||||||||||| ||  ||  ||||||||||||||    
T  11689588 aatttttaaatgacccctatttccaaggactaaacacatataaaa 11689544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 229
Target Start/End: Complemental strand, 15848233 - 15848083
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||| ||||||||||| |  ||||||| ||||||||||||||||||||||   |||||||  ||| |  |||||| | | | | |||  |||    
T  15848233 attagtgacgtggcagtgattaagtg--gggagagggacgaaattttaaatgattaaacaatgcaagggtaaattaccaggattagcgattacagggacc 15848136  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatataaaagctttaca 229  Q
    || |||||||||||||||| |||||  ||||||| ||||||| |||| |||||    
T  15848135 aatttttaaacgacccctaattgcaaggatgaaatacatatataagccttaca 15848083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 16105672 - 16105553
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcaga 203  Q
    |||| ||| ||| |||||||||||||||||||||||  ||| |||||||||||||| ||  ||| |||  ||||  ||||||| | ||||||||| |||     
T  16105672 ggggggagagactaaattttaaatgattaaattttgggagggcaaaatgtcaggattaaggaatgcagggaccattttttaaatggcccctatttacagg 16105573  T
Q  204 gatgaaacacatataaaagc 223  Q
    ||  ||||||||||||||||    
T  16105572 gactaaacacatataaaagc 16105553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 36755238 - 36755183
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||||||||||||||||||||| |  ||||||| ||||||||||||||||||||||    
T  36755238 attagtgacgtgacagtgattaagtg--gggagagagacgaaattttaaatgattaaa 36755183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 223
Target Start/End: Original strand, 17266638 - 17266759
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacca-aattttaaacga-cccctatttgca 201  Q
    ||||||| ||||||||||||||||||||||||||||  ||| |||| ||||| ||| ||| ||| |||| ||||   ||||||| || ||||||||||||    
T  17266638 ggggagaatgacgaaattttaaatgattaaattttgggagggcaaattgtcaagattaacgaatacagagaccatttttttaaatgaccccctatttgca 17266737  T
Q  202 gagatgaaacacatataaaagc 223  Q
    |  |  ||||||||||||||||    
T  17266738 ggaactaaacacatataaaagc 17266759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 11347542 - 11347496
Alignment:
Q  105 gggagagtgacgaaattttaaatgattaaattttgcaaggacaaaat 151  Q
    ||||||| ||||||||||||||||||||||||||||| |||| ||||    
T  11347542 gggagagagacgaaattttaaatgattaaattttgcagggaccaaat 11347496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 37895630 - 37895685
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||||||||| ||||||||||| |  ||||||| ||||||||||||||||||||||    
T  37895630 attagtgacgtggcagtgattaagtg--gggagagggacgaaattttaaatgattaaa 37895685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 44714044 - 44714175
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    ||||||||| || ||||||||||| |  ||||||| ||||||||||||||||||||||   |||||||  ||| || |||||| | ||| | |||  ||     
T  44714044 attagtgacatggcagtgattaagtg--gggagagggacgaaattttaaatgattaaacaatgcaagggtaaattgccaggattagcaattacagggact 44714141  T
Q  177 aaattttaaacgacccctatttgcagagatgaaa 210  Q
    || |||||||||||||||| |||||  |||||||    
T  44714142 aatttttaaacgacccctaattgcaaggatgaaa 44714175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 3555361 - 3555257
Alignment:
Q  113 gacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaaca 212  Q
    ||||||||||||||||||||||   |||||||  ||  ||| ||||  ||| ||| |||| ||||| |||||||||||||||| |||||  ||||||| |    
T  3555361 gacgaaattttaaatgattaaagaatgcaaggctaatttgtaaggaataacgaatacagagaccaatttttaaacgacccctaattgcaaggatgaaata 3555262  T
Q  213 catat 217  Q
    |||||    
T  3555261 catat 3555257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 216
Target Start/End: Complemental strand, 36382306 - 36382169
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||| ||||||||||| |  ||||||| || |||||||||||||||||||   |||||||  ||| ||||||||| | | | |  ||  |||    
T  36382306 attagtgacgtggcagtgattaagtg--gggagagggatgaaattttaaatgattaaacaatgcaagggtaaattgtcaggattagcgattatagggacc 36382209  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacata 216  Q
    || |||||||||| ||||| |||||  ||||||| |||||    
T  36382208 aatttttaaacgaaccctaattgcaaggatgaaatacata 36382169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 39935563 - 39935457
Alignment:
Q  116 gaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaacacat 215  Q
    ||||||||||||||||||| |||||||||| ||  ||||||||| ||| | |  |  |||||| |||||||| || |||| |||||| || |||||||||    
T  39935563 gaaattttaaatgattaaactttgcaaggataatttgtcaggattaacgattataagaaccaatttttaaaccacacctaattgcag-gacgaaacacat 39935465  T
Q  216 ataaaagc 223  Q
    || |||||    
T  39935464 attaaagc 39935457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 39423660 - 39423605
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    ||||||||| || ||||||||||| |  ||||||| ||||||||||||||||||||||    
T  39423660 attagtgacatggcagtgattaagtg--gggagagggacgaaattttaaatgattaaa 39423605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 3653392 - 3653428
Alignment:
Q  108 agagtgacgaaattttaaatgattaaattttgcaagg 144  Q
    |||| |||||||||||||||||||||| |||||||||    
T  3653392 agagggacgaaattttaaatgattaaactttgcaagg 3653428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 15645029 - 15645139
Alignment:
Q  113 gacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaaca 212  Q
    |||||||||||||||||||||||||||  ||| |||||||||||||| ||| ||| || ||||||| ||||||| |||||  ||||||||  |  |||||    
T  15645029 gacgaaattttaaatgattaaattttgggagggcaaaatgtcaggattaacgaatacataaaccaatttttaaatgacccacatttgcaggaactaaaca 15645128  T
Q  213 catataaaagc 223  Q
    |||||||||||    
T  15645129 catataaaagc 15645139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 12904899 - 12904755
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    ||||||||||||||| |||||||| |  ||||||| ||||||||||||||| |||||||||||  |||||||| ||||||||| ||| ||| |||  |||    
T  12904899 attagtgacgtgacattgattaagtg--gggagagggacgaaattttaaattattaaattttgggaggacaaattgtcaggattaacgaatacagggacc 12904802  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatataaaagc 223  Q
    |  ||||||| || ||||||||  || ||  ||||| ||||||||||    
T  12904801 attttttaaatgatccctatttagagggactaaacagatataaaagc 12904755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 223
Target Start/End: Complemental strand, 5326164 - 5326058
Alignment:
Q  117 aaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaacacata 216  Q
    |||||||||| |||||||||||| |||| ||||||| |||||| ||  ||| |||  ||||  ||||||| ||||||||||||||| ||| |||||||||    
T  5326164 aaattttaaaagattaaattttgaaagggcaaaatgccaggattaaggaatgcagggaccattttttaaatgacccctatttgcagggattaaacacata 5326065  T
Q  217 taaaagc 223  Q
    |||||||    
T  5326064 taaaagc 5326058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 19892591 - 19892729
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||| ||||||||||| |  |||||| |||||||||||||||||||||||   |||||||  ||| ||| ||||| ||| | | |||| |||    
T  19892591 attagtgacgtggcagtgattaagtg--gggagaatgacgaaattttaaatgattaaacaatgcaagggtaaattgttaggattaacgattacagagacc 19892688  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || |||||||||||| ||| |||||  ||||||| ||||||    
T  19892689 aatttttaaacgacctctaattgcaaggatgaaatacatat 19892729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 42067841 - 42067951
Alignment:
Q  113 gacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaaca 212  Q
    |||||||||||||||||||||| |||||| || ||   || |||||| | ||| | |||  ||||||||||||| |||||||| |||||| |||||||||    
T  42067841 gacgaaattttaaatgattaaagtttgcaggggcagtttgccaggattatcaattacagggaccaaattttaaatgacccctaattgcagggatgaaaca 42067940  T
Q  213 catataaaagc 223  Q
    ||||| |||||    
T  42067941 catattaaagc 42067951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 201
Target Start/End: Complemental strand, 13963009 - 13962887
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||||||||||||||| ||||  |||| ||||||||||||||||||||||   |||||||  ||| |  |||||| | ||| | |||  |||    
T  13963009 attagtgacgtgacagtgattaagtgagg--agagggacgaaattttaaatgattaaacaatgcaagggtaaattaccaggattagcaattacagggacc 13962912  T
Q  177 aaattttaaacgacccctatttgca 201  Q
    || |||||||||||||||| |||||    
T  13962911 aatttttaaacgacccctaattgca 13962887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 39453445 - 39453307
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    ||||||||| || ||||||||||| |  ||||||| ||||||||||||||||||||||   |||||||  ||| || |||||| | | | | |||| |||    
T  39453445 attagtgacatgccagtgattaagtg--gggagagggacgaaattttaaatgattaaacaatgcaagggtaaattgccaggattagcgattacagagacc 39453348  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || |||||||||||||||| |||||  ||||||| ||||||    
T  39453347 aatttttaaacgacccctaattgcaaggatgaaatacatat 39453307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 14848859 - 14848740
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcaga 203  Q
    |||| ||| ||| |||||||||||||||||||||||  |||  ||||||  ||||| ||  ||| || ||||||  ||||||| || ||||||||||||     
T  14848859 ggggggagggaccaaattttaaatgattaaattttgggagggaaaaatgcaaggattaaggaatgcacaaaccattttttaaatgatccctatttgcagg 14848760  T
Q  204 gatgaaacacatataaaagc 223  Q
    ||  ||||||||||||||||    
T  14848759 gactaaacacatataaaagc 14848740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 29646645 - 29646725
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggat 159  Q
    ||||||||| |||||||||||||| |  ||||||| ||||||||||||||||||||||   |||||||  ||| |||||||||    
T  29646645 attagtgacatgacagtgattaagtg--gggagagggacgaaattttaaatgattaaacaatgcaagggtaaattgtcaggat 29646725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 217
Target Start/End: Original strand, 35920477 - 35920605
Alignment:
Q  87 tgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaa 186  Q
    |||||||||||||| |  ||||||| ||||||||||||||||||||||   || ||||| ||| ||||||||| | | | | |||  ||||| |||||||    
T  35920477 tgacagtgattaagtg--gggagagggacgaaattttaaatgattaaacaatggaaggataaattgtcaggattagcgattacagggaccaatttttaaa 35920574  T
Q  187 cgacccctatttgcagagatgaaacacatat 217  Q
    ||||||||| ||||   ||||||| ||||||    
T  35920575 cgacccctaattgctatgatgaaatacatat 35920605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 32242387 - 32242332
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||||||||| ||||||||||| |  ||||||| ||||||||||||||||||||||    
T  32242387 attagtgacgtggcagtgattaagtg--gggagagggacgaaattttaaatgattaaa 32242332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 38475307 - 38475413
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcaga 203  Q
    |||||||| ||||||||||||||||||||||   |||||||  ||| ||||||||| ||| | | ||   ||||| |||||||||||||||| |||||      
T  38475307 ggggagagggacgaaattttaaatgattaaacaatgcaagggtaaattgtcaggattaacgattacatggaccaatttttaaacgacccctaattgcaag 38475406  T
Q  204 gatgaaa 210  Q
    |||||||    
T  38475407 gatgaaa 38475413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 5994034 - 5993896
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    ||||||||| || ||||||||||| |  ||||||| ||||||||||||||||||||||   |||||||  ||| || ||| || | | | | |||  |||    
T  5994034 attagtgacatggcagtgattaagtg--gggagagggacgaaattttaaatgattaaacaatgcaagggtaaattgccagaattagcgattacagggacc 5993937  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || |||||||||||||||| |||||  ||||||| ||||||    
T  5993936 aatttttaaacgacccctaattgcaaggatgaaatacatat 5993896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 16157163 - 16157276
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcaga 203  Q
    |||||||| ||| ||||||||||||||||||   |||||||  ||| ||||||||| ||| | |  ||  ||||| |||||||||||||||| |||||      
T  16157163 ggggagagggacaaaattttaaatgattaaacaatgcaagggtaaattgtcaggattaacgattatagggaccaatttttaaacgacccctaattgcaag 16157262  T
Q  204 gatgaaacacatat 217  Q
    ||||||| ||||||    
T  16157263 gatgaaatacatat 16157276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 35512293 - 35512155
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||| ||| ||||||||||| |  ||||||| ||||||||||||||||||||||   |||||||  ||| || |||||| | | | | |||  |||    
T  35512293 attagtgatgtggcagtgattaagtg--gggagagggacgaaattttaaatgattaaacaatgcaagggtaaattgccaggattagcgattacagggacc 35512196  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || ||||||||||||| || |||||  ||||||| ||||||    
T  35512195 aatttttaaacgacccttaattgcaaggatgaaatacatat 35512155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 10684084 - 10684028
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaat 135  Q
    ||||||||| |||||||||||||| ||||  | |||||| |||||||||||||||||||    
T  10684084 attagtgacatgacagtgattaagtgagg--aaagtgacaaaattttaaatgattaaat 10684028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 8322549 - 8322494
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    ||||||||  |||||||||||||| |  ||||||| ||||||||||||||||||||||    
T  8322549 attagtgaaatgacagtgattaagtg--gggagagggacgaaattttaaatgattaaa 8322494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 11047582 - 11047527
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    ||||||||| || ||||||||||| |  ||||||| ||||||||||||||||||||||    
T  11047582 attagtgacatggcagtgattaagtg--gggagagagacgaaattttaaatgattaaa 11047527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 18247449 - 18247497
Alignment:
Q  169 cagaaaccaaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    |||| |||||||||||||||||||||| |||||  ||||||| ||||||    
T  18247449 cagagaccaaattttaaacgacccctaattgcaaggatgaaatacatat 18247497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 40150037 - 40150081
Alignment:
Q  13 taggggcattttggtccgtttgcgtaaacttttgatgtgtaagca 57  Q
    ||||||||||||||||||||  |||||| ||||||||||| ||||    
T  40150037 taggggcattttggtccgttcacgtaaagttttgatgtgttagca 40150081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 33689662 - 33689800
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||| ||||||||||| |  ||||||| |||||||||||||||||||||||  |||||||  ||| || |||||| | | | | ||  ||||    
T  33689662 attagtgacgtggcagtgattaagtg--gggagagggacgaaattttaaatgattaaataatgcaagggtaaattgccaggattagcgattacatgaacc 33689759  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || |||||||||||||||| ||||| |||||||| ||||||    
T  33689760 aatttttaaacgacccctaattgcaaagatgaaatacatat 33689800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 30380962 - 30380848
Alignment:
Q  108 agagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatg 207  Q
    |||| |||||||||||||||||||||||||||  | |||||||| ||||||| || |||  || ||||||| ||||||| ||| ||||||| |||| |      
T  30380962 agagggacgaaattttaaatgattaaattttgacatgacaaaatatcaggattaagaaaaacaaaaaccaatttttaaatgactcctatttacagaaact 30380863  T
Q  208 aaacacatataaaag 222  Q
    |||||||||||||||    
T  30380862 aaacacatataaaag 30380848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 25108412 - 25108522
Alignment:
Q  113 gacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaaca 212  Q
    |||||||||||||||||||||  |||||| |||||   || |||||| | ||| | |||  ||||||||||||| |||||||| |||||| |||||||||    
T  25108412 gacgaaattttaaatgattaacgtttgcagggacagtttgccaggattagcaattacagggaccaaattttaaatgacccctaattgcagggatgaaaca 25108511  T
Q  213 catataaaagc 223  Q
    ||||| |||||    
T  25108512 catattaaagc 25108522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 40033748 - 40033877
Alignment:
Q  86 gtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaa 185  Q
    ||||||||||||||| |  ||||||| ||| ||||||||||||||||||   |||||||  ||| || |||||| | ||| |  ||||||||| ||||||    
T  40033748 gtgacagtgattaagtg--gggagagggacaaaattttaaatgattaaacaatgcaagggtaaattgccaggattagcaattatagaaaccaatttttaa 40033845  T
Q  186 acgacccctatttgcagagatgaaacacatat 217  Q
    |||||||||| |||||  ||||||| ||||||    
T  40033846 acgacccctaattgcaaggatgaaatacatat 40033877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 44654790 - 44654930
Alignment:
Q  81 gtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaat 180  Q
    |||||||||||||||||||  |  ||||||| ||||||||||||| |||||||||||||  ||| ||||||| || |||  |  ||| ||   || || |    
T  44654790 gtgacgtgacagtgattaaatg--gggagagggacgaaattttaagtgattaaattttggcaggccaaaatgccatgatttaggaatacatggacaaatt 44654887  T
Q  181 tttaaacgacccctatttgcagagatgaaacacatataaaagc 223  Q
    |||||| ||||||||||||||| ||  ||||||||||||||||    
T  44654888 tttaaatgacccctatttgcagggactaaacacatataaaagc 44654930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 1079538 - 1079648
Alignment:
Q  113 gacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaaca 212  Q
    |||||||||||||| ||||||| |||||||||  ||  || |||||| ||| | | |||  ||||| ||||||| |||||||| |||||| |||||||||    
T  1079538 gacgaaattttaaaagattaaactttgcaaggctaatttgccaggattaacgattacagggaccaatttttaaatgacccctaattgcagggatgaaaca 1079637  T
Q  213 catataaaagc 223  Q
    ||||| |||||    
T  1079638 catattaaagc 1079648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 26463881 - 26463936
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||||||||||||||||||||| |  ||||||| ||||||||||||||||||||||    
T  26463881 attagtgacgtgacagtgattaagtg--gggagagggacgaaattttaaatgattaaa 26463936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 9294241 - 9294379
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    ||||||||| |||||||||||||| |  ||||||| ||||||||||||||||||||||   |||||||  ||| || |||||| | | | |  ||  |||    
T  9294241 attagtgacatgacagtgattaagtg--gggagagggacgaaattttaaatgattaaacaatgcaagggtaaattgccaggattagcgattatagggacc 9294338  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || |||||||||||||||| |||||  ||||||| ||||||    
T  9294339 aatttttaaacgacccctaattgcaaggatgaaatacatat 9294379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 41988107 - 41988037
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaa 149  Q
    |||||||| ||| ||||||||||| |||| |||||  ||||||||||||||||||||||||||| ||| ||||    
T  41988107 attagtgatgtggcagtgattaagtgaggagagag--acgaaattttaaatgattaaattttgcgagggcaaa 41988037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 20704550 - 20704431
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcaga 203  Q
    |||||||| |||| |||||||| |||||||||||||  ||| |||||||||| ||| ||  |||  || |||||  ||||||| ||| | |||||||||     
T  20704550 ggggagagggacggaattttaagtgattaaattttggcagggcaaaatgtcaagattaaggaatataggaaccattttttaaatgactcttatttgcagg 20704451  T
Q  204 gatgaaacacatataaaagc 223  Q
    ||  ||||||||||||||||    
T  20704450 gactaaacacatataaaagc 20704431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 20704610 - 20704754
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||||| ||||||||| |  || |||| ||||||||||||| |||||||||||||  ||  ||||||  |||||| || |||| ||  ||||    
T  20704610 attagtgacgtgactgtgattaagtg--ggaagagggacgaaattttaagtgattaaattttggcagagcaaaataccaggattaagaaatacatgaacc 20704707  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatataaaagc 223  Q
    |  |||||||  | |||||||||||| |   ||||||||||||||||    
T  20704708 attttttaaataatccctatttgcaggggctaaacacatataaaagc 20704754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 43384428 - 43384348
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggat 159  Q
    ||||||||| |||||||||||||| |  ||||||| ||||||||||||||||||||||   |||||||  ||| |||||||||    
T  43384428 attagtgacatgacagtgattaagtg--gggagagagacgaaattttaaatgattaaacaatgcaagggtaaattgtcaggat 43384348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 39399372 - 39399435
Alignment:
Q  74 cagattagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttg 139  Q
    ||||||||||||||| ||||||||||  |  ||||||| || ||||||||||||||||||||||||    
T  39399372 cagattagtgacgtggcagtgattaactg--gggagagagatgaaattttaaatgattaaattttg 39399435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 40506070 - 40506209
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||| || |||||||||||||| | || |||||  ||||||||||||||||||||||  || ||||  ||| ||||||||| ||| | | ||| ||||    
T  40506070 attagttacatgacagtgattaagtgcggagagag--acgaaattttaaatgattaaataatgtaagggtaaattgtcaggattaacgattacaggaacc 40506167  T
Q  177 aaattttaaacgacccc-tatttgcagagatgaaacacatat 217  Q
    || ||||||| |||||| || |||||  ||||||| ||||||    
T  40506168 aacttttaaatgaccccataattgcaaggatgaaatacatat 40506209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 54317911 - 54317974
Alignment:
Q  74 cagattagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttg 139  Q
    ||||||||||||||| ||||||||||     ||||||| |||||||||||||||||||||||||||    
T  54317911 cagattagtgacgtggcagtgattaatta--gggagagagacgaaattttaaatgattaaattttg 54317974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 23458262 - 23458400
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||| ||| ||||||||||| |  ||||||| ||||||||||||||||||||||   |||||||  ||| ||  ||||| | | | | |||| |||    
T  23458262 attagtgatgtggcagtgattaagtg--gggagagggacgaaattttaaatgattaaacaatgcaagggtaaattgcaaggattagcgattacagagacc 23458359  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || ||||||||||||| || |||||  ||||||| ||||||    
T  23458360 aatttttaaacgacccataattgcaaggatgaaatacatat 23458400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 23276361 - 23276413
Alignment:
Q  174 accaaattttaaacgacccctatttgcagagatgaaacacatataaaagcttt 226  Q
    ||||| ||||||| |||||||| |||||| |||||||||||||| ||||||||    
T  23276361 accaatttttaaatgacccctaattgcagggatgaaacacatattaaagcttt 23276413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 42854553 - 42854517
Alignment:
Q  106 ggagagtgacgaaattttaaatgattaaattttgcaa 142  Q
    |||||| ||||||||||||||||||||||||||||||    
T  42854553 ggagagagacgaaattttaaatgattaaattttgcaa 42854517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 134
Target Start/End: Original strand, 19741200 - 19741230
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||||||||||||||||||||||||||||    
T  19741200 ggggagagtgacgaaattttaaatgattaaa 19741230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 21783813 - 21783851
Alignment:
Q  114 acgaaattttaaatgattaaattttgcaaggacaaaatg 152  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  21783813 acgaaattttaaatgattaaattttgcagggataaaatg 21783851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 33156277 - 33156332
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||||||||| ||||||||||| | |||||| |  |||||||||||||||||||||    
T  33156277 attagtgacgtggcagtgattaagtggggggaggg--acgaaattttaaatgattaaa 33156332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 40758289 - 40758234
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    ||||||||||||  |||||||||| |  ||||||| ||||||||||||||||||||||    
T  40758289 attagtgacgtggtagtgattaagtg--gggagagggacgaaattttaaatgattaaa 40758234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 51994173 - 51994224
Alignment:
Q  81 gtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||||| ||||||||||| |  ||||||| ||||||||||||||||||||||    
T  51994173 gtgacgtggcagtgattaagtg--gggagagggacgaaattttaaatgattaaa 51994224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 36314575 - 36314672
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgca 201  Q
    |||||||| |||||||||||||||||||||   ||||||||  ||| || |||||| ||||| | |||  || || ||||||||||| |||| |||||    
T  36314575 ggggagagggacgaaattttaaatgattaacaattgcaaggctaaattgccaggattaacaattacagggacgaatttttaaacgacgcctaattgca 36314672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 46474935 - 46474822
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcaga 203  Q
    |||||||| ||| ||||||||||||||||||   ||||| |  ||| || || ||| | | | | |||| ||||| |||||||||||||||| ||||| |    
T  46474935 ggggagagggacaaaattttaaatgattaaacaatgcaatggtaaattgccaagattagcgattacagagaccaatttttaaacgacccctaattgcaaa 46474836  T
Q  204 gatgaaacacatat 217  Q
    ||||||| ||||||    
T  46474835 gatgaaatacatat 46474822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 47857561 - 47857594
Alignment:
Q  112 tgacgaaattttaaatgattaaattttgcaagga 145  Q
    ||||||||||||||||||||||| ||||||||||    
T  47857561 tgacgaaattttaaatgattaaactttgcaagga 47857594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 48322654 - 48322751
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgca 201  Q
    |||||||| |||||||||||||||||||||   ||||||||  ||| || |||||| ||||| | |||  || || ||||||||||| |||| |||||    
T  48322654 ggggagagggacgaaattttaaatgattaacaattgcaaggctaaattgccaggattaacaattacagggacgaatttttaaacgacgcctaattgca 48322751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 32431509 - 32431613
Alignment:
Q  113 gacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaaca 212  Q
    |||||||||||||||| ||||| |||||||||  ||  ||||||||| ||| | | |||  ||||| ||||||| |||||||| || ||| || |||| |    
T  32431509 gacgaaattttaaatggttaaactttgcaaggctaatttgtcaggattaacgattgcagggaccaatttttaaatgacccctaattacagggacgaaata 32431608  T
Q  213 catat 217  Q
    |||||    
T  32431609 catat 32431613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 11400277 - 11400394
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcaga 203  Q
    |||||||| ||  |||||||||||||||||||||||||  | |||||    ||||| |||||||||||  ||||||||||||| ||||| ||||||||||    
T  11400277 ggggagagagaataaattttaaatgattaaattttgcagtggcaaaaaca-aggattaacaaattcagggaccaaattttaaatgacccatatttgcaga 11400375  T
Q  204 gatgaaacacatataaaag 222  Q
    ||  |||||||||||||||    
T  11400376 gactaaacacatataaaag 11400394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 223
Target Start/End: Original strand, 15714601 - 15714719
Alignment:
Q  105 gggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagag 204  Q
    |||||||  ||||||| |||| ||||||||| |||  ||| |||||||||||||| ||  ||| |||| ||||| ||||||| ||||||||||||||| |    
T  15714601 gggagaggaacgaaatgttaagtgattaaatcttggcagggcaaaatgtcaggattaaggaatgcagagaccaatttttaaatgacccctatttgcaggg 15714700  T
Q  205 atgaaacacatataaaagc 223  Q
    |  ||||||||||||||||    
T  15714701 actaaacacatataaaagc 15714719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 28469291 - 28469429
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    ||||||||||||  |||||||||| |  ||||||| ||||||||||||||||||||||   |||||||  ||| || |||||| ||| | | |||  |||    
T  28469291 attagtgacgtggtagtgattaagtg--gggagagggacgaaattttaaatgattaaacaatgcaagggtaaattgccaggattaacgattacagggacc 28469388  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || |||||||||||||||| |||||  ||||||| ||||||    
T  28469389 aatttttaaacgacccctaattgcaaggatgaaatacatat 28469429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 32053426 - 32053481
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||||||||||||||||||||| |  ||||||| ||||||||||||||||||||||    
T  32053426 attagtgacgtgacagtgattaagtg--gggagagggacgaaattttaaatgattaaa 32053481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 6571150 - 6571036
Alignment:
Q  85 cgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaatttta 184  Q
    |||||||||||||||| |  ||||||| ||| ||||||||||||||||||   |||||||  ||| ||||||||| ||| | | |||  ||||| |||||    
T  6571150 cgtgacagtgattaagtg--gggagagggacaaaattttaaatgattaaacaatgcaagggtaaattgtcaggattaacgattacagggaccaattttta 6571053  T
Q  185 aacgacccctatttgca 201  Q
    ||||||||||| |||||    
T  6571052 aacgacccctaattgca 6571036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 7356507 - 7356623
Alignment:
Q  105 gggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagag 204  Q
    ||||||| ||| |||||||||||||||||||  | || ||  | ||| ||||||| ||||||| |||  ||||| ||||||| ||||||||||| ||| |    
T  7356507 gggagagggaccaaattttaaatgattaaatagttcaggggtataatatcaggattaacaaatacagggaccaa-ttttaaatgacccctatttacaggg 7356605  T
Q  205 atgaaacacatataaaag 222  Q
    || |||||||||||||||    
T  7356606 attaaacacatataaaag 7356623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 17204890 - 17204995
Alignment:
Q  117 aaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaacacata 216  Q
    ||||||| |||||||||||||||||  | |||||    ||||| |||||||||||| ||||||||||||||||| | ||||||||  ||  ||| |||||    
T  17204890 aaattttgaatgattaaattttgcagcggcaaaaaacaaggattaacaaattcagagaccaaattttaaacgactcttatttgcatggactaaatacata 17204989  T
Q  217 taaaag 222  Q
    ||||||    
T  17204990 taaaag 17204995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 20563854 - 20563735
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcaga 203  Q
    |||||||| ||| ||||||||||||||||||||||| |  | |||||    ||||| | |||||| |   || |||||||||| |||||||||||||||     
T  20563854 ggggagagagactaaattttaaatgattaaattttgtagtggcaaaaaacaaggattagcaaatttacggactaaattttaaatgacccctatttgcagg 20563755  T
Q  204 gatgaaacacatataaaagc 223  Q
    ||  ||||||||||||||||    
T  20563754 gactaaacacatataaaagc 20563735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 217
Target Start/End: Original strand, 45010893 - 45011025
Alignment:
Q  83 gacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattt 182  Q
    |||||| ||||||||||| |  ||||||| ||||||||||||||||||||||   |||||||  ||| ||  ||||| | | ||| ||  |||||| |||    
T  45010893 gacgtggcagtgattaagtg--gggagagagacgaaattttaaatgattaaacaatgcaagggtaaattgcaaggattagcgaatacatgaaccaatttt 45010990  T
Q  183 taaacgacccctatttgcagagatgaaacacatat 217  Q
    ||||||||||||| |||||  ||||||| ||||||    
T  45010991 taaacgacccctaattgcaaggatgaaatacatat 45011025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 2640461 - 2640516
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    ||||||||| |||||||||||||| |  ||||||| ||||||||||||||||||||||    
T  2640461 attagtgacatgacagtgattaagtg--gggagagagacgaaattttaaatgattaaa 2640516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 20426651 - 20426751
Alignment:
Q  117 aaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaacacata 216  Q
    |||||||||||||||||| ||||  |||  |||||| |||||| | | ||| |||  ||||| |||||||||||| ||| |||||| ||||||| |||||    
T  20426651 aaattttaaatgattaaactttgtgagggtaaaatgccaggattagcgaatacagggaccaatttttaaacgacctctaattgcagggatgaaatacata 20426750  T
Q  217 t 217  Q
    |    
T  20426751 t 20426751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 12229389 - 12229498
Alignment:
Q  113 gacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaaca 212  Q
    ||||||||||| |||||||||| |||||||| | ||  ||||||||| ||||| |  || || |||||||||||  ||| ||| ||| || |||||||||    
T  12229389 gacgaaatttttaatgattaaactttgcaagaataatttgtcaggattaacaattataggaatcaaattttaaataacctctaattggag-gatgaaaca 12229487  T
Q  213 catataaaagc 223  Q
    ||||| |||||    
T  12229488 catattaaagc 12229498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 13311342 - 13311436
Alignment:
Q  105 gggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttg 199  Q
    ||||||| ||||||||||||||| ||||||||||| |||| |||| ||| | ||| ||| ||| ||  |||||   |||||| ||||||||||||    
T  13311342 gggagagggacgaaattttaaattattaaattttggaagggcaaattgttaagattaacgaatacatgaaccattgtttaaatgacccctatttg 13311436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 23181277 - 23181332
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    ||||||||| |||||||||||||| |  | ||||| ||||||||||||||||||||||    
T  23181277 attagtgacatgacagtgattaagtg--gagagagggacgaaattttaaatgattaaa 23181332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 38643695 - 38643636
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaatttt 138  Q
    ||||||||||||||||| |||||| |  ||||||| |||||||| |||||||||||| ||||    
T  38643695 attagtgacgtgacagtaattaagtg--gggagagggacgaaatcttaaatgattaattttt 38643636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 40379914 - 40379859
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||||||||| || |||||||| |  ||||||| ||||||||||||||||||||||    
T  40379914 attagtgacgtggcattgattaagtg--gggagagggacgaaattttaaatgattaaa 40379859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 42731564 - 42731509
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    ||||||||| || ||||||||||| |  ||||||| ||||||||||||||||||||||    
T  42731564 attagtgacatggcagtgattaagtg--gggagagggacgaaattttaaatgattaaa 42731509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 13311191 - 13311146
Alignment:
Q  105 gggagagtgacgaaattttaaatgattaaattttgcaaggacaaaa 150  Q
    ||||| ||||||||||||||||| ||||||||||| |||| |||||    
T  13311191 gggagggtgacgaaattttaaattattaaattttgaaagggcaaaa 13311146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 23608886 - 23608809
Alignment:
Q  146 caaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaacacatataaaagc 223  Q
    ||||||| |||||| || |||| |||  ||||| ||||||| ||||||||||||||  ||  ||||||||||||||||    
T  23608886 caaaatgccaggattaagaaatacagggaccaatttttaaatgacccctatttgcaaggactaaacacatataaaagc 23608809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 27396883 - 27396933
Alignment:
Q  82 tgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    ||||||| ||||||||||| |  ||||||| ||||||||||||||||||||||    
T  27396883 tgacgtggcagtgattaagtg--gggagagggacgaaattttaaatgattaaa 27396933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 32687507 - 32687426
Alignment:
Q  114 acgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgaccccta 195  Q
    ||||||||||||||||||||  ||||||||| |||  || |||||| ||| | | |||  ||||||||||||| ||||||||    
T  32687507 acgaaattttaaatgattaatatttgcaagggcaatttgccaggattaacgattacagggaccaaattttaaatgaccccta 32687426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 22245583 - 22245539
Alignment:
Q  13 taggggcattttggtccgtttgcgtaaacttttgatgtgtaagca 57  Q
    ||||||||||||||| ||||  |||||||||||||||||| ||||    
T  22245583 taggggcattttggttcgttcacgtaaacttttgatgtgtcagca 22245539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 23381 - 23232
Alignment:
Q  72 agcagattagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcag 171  Q
    |||| |||| ||||||| ||||||||||| | |||||||   || |||||||||||||||||| |||| ||||| | | || |||||| ||||||| ||     
T  23381 agcaaattactgacgtggcagtgattaagtggggggagaa--accaaattttaaatgattaaactttggaaggatagattgacaggattaacaaatacat 23284  T
Q  172 aaaccaaattttaaacgacccctatttgcagagatgaaacacatataaaagc 223  Q
    | ||||| ||||||| ||| | ||||||||| || ||||||||||| |||||    
T  23283 agaccaatttttaaatgactcatatttgcagggacgaaacacatatcaaagc 23232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 24085919 - 24085839
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggat 159  Q
    |||||||||||||||||||||||| |  ||||||| ||| |||||||||  ||||||||||||  ||||||||||||||||||    
T  24085919 attagtgacgtgacagtgattaagtg--gggagagggacaaaattttaagcgattaaattttggcaggacaaaatgtcaggat 24085839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 79 - 227
Target Start/End: Original strand, 9499883 - 9500028
Alignment:
Q  79 tagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaa 178  Q
    |||||||||||||||||||||| | |||   || ||  |||||||||||||||||||||||  |||  ||||||||||||| || |||| ||  |||||     
T  9499883 tagtgacgtgacagtgattaagtggggg---agggatcaaattttaaatgattaaattttgggagggtaaaatgtcaggattaagaaatacatgaaccat 9499979  T
Q  179 attttaaacgacccctatttgcagagatgaaacacatataaaagcttta 227  Q
     |||||| ||||||||||||| |  ||  ||||||||| ||||||||||    
T  9499980 tttttaatcgacccctatttgtaaggactaaacacatacaaaagcttta 9500028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 222
Target Start/End: Original strand, 22890277 - 22890420
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||| ||||||||||||||| |  || |||| ||| ||||||||| |||||| ||||||| |||  ||||||||| ||| ||  ||| |||  |||    
T  22890277 attagtgatgtgacagtgattaagtg--ggaagagggacaaaattttaagtgattagattttgccagggaaaaatgtcaagattaaggaatacaggtacc 22890374  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatataaaag 222  Q
    |  ||||||| ||||||||||||||| ||  |||||||||||||||    
T  22890375 atgttttaaatgacccctatttgcagggactaaacacatataaaag 22890420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 4405943 - 4406081
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||||||||||||||| |  || |||| ||||||||||||||||||||||  ||||||||  ||| ||  ||||| ||||||| ||   |||    
T  4405943 attagtgacgtgacagtgattaagtg--ggaagagggacgaaattttaaatgattaaacattgcaagggtaaattgcaaggattaacaaatacatggacc 4406040  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || |||||||| ||||||| || ||  ||||||| ||||||    
T  4406041 aatttttaaacaacccctaattacaaggatgaaatacatat 4406081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 13186205 - 13186067
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||| ||||||||||| |  ||||||| ||||||||||||||||||||||   |||||||  ||| ||||||||| | | | | ||  ||||    
T  13186205 attagtgacgtggcagtgattaagtg--gggagagagacgaaattttaaatgattaaacaatgcaagggtaaattgtcaggattagcgattacatgaacc 13186108  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || |||||||||| ||||| |||||  ||||||| ||||||    
T  13186107 aatttttaaacgatccctaattgcaaggatgaaatacatat 13186067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 16388809 - 16388947
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||| ||||||||||| |  ||||||| ||||||||||||||||||||||   |||||||  ||| || |||||| | ||| | ||  ||||    
T  16388809 attagtgacgtggcagtgattaagtg--gggagagggacgaaattttaaatgattaaacaatgcaagggtaaattgccaggattagcaattacatgaacc 16388906  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || ||||||| |||||||| |||||  ||||||| ||||||    
T  16388907 aatttttaaatgacccctaattgcaaggatgaaatacatat 16388947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 39071821 - 39071683
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||| | ||||||||||| |  ||||||| ||||||||||||||||||||||   |||||||  ||| ||||||||| | | | | |||  |||    
T  39071821 attagtgacgcggcagtgattaagtg--gggagagggacgaaattttaaatgattaaacaatgcaagggtaaattgtcaggattagcgattacagggacc 39071724  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || |||||||||||||||| |||||  ||||||| ||||||    
T  39071723 aatttttaaacgacccctaattgcaaggatgaaatacatat 39071683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 9337231 - 9337149
Alignment:
Q  13 taggggcattttggtccgtttgcgtaaacttttgatgtgtaagcaagcactgccgcataagcagattagtgacgtgacagtgattaa 99  Q
    ||||||||||||||||||||  |||||| |||||||||||     ||||||||| | |||||| |||||||||||| ||||||||||    
T  9337231 taggggcattttggtccgttcacgtaaagttttgatgtgt----tagcactgccacgtaagcaaattagtgacgtggcagtgattaa 9337149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 192
Target Start/End: Complemental strand, 36928621 - 36928508
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||| ||||||||||| |  ||||||| ||||||||||||||||||||||   |||||||  ||| ||||||||| | | | | || | |||    
T  36928621 attagtgacgtggcagtgattaagtg--gggagagggacgaaattttaaatgattaaacaatgcaagggtaaattgtcaggattagcgattacatagacc 36928524  T
Q  177 aaattttaaacgaccc 192  Q
    || |||||||||||||    
T  36928523 aatttttaaacgaccc 36928508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 2693802 - 2693860
Alignment:
Q  79 tagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttg 139  Q
    |||||||||||||||||||||| | ||||||  | || |||||||||||||||||||||||    
T  2693802 tagtgacgtgacagtgattaagtggggggag--taaccaaattttaaatgattaaattttg 2693860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 23663822 - 23663919
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgca 201  Q
    |||||||| ||||||||||||||||||||||   |||||||  ||| || |||||| | | | | |||| ||||| |||||||||||||||| |||||    
T  23663822 ggggagagggacgaaattttaaatgattaaacaatgcaagggtaaattgccaggattagcgattacagagaccaatttttaaacgacccctaattgca 23663919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 31608796 - 31608849
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgatta 132  Q
    |||||||||||| ||||||||||| |  ||||||| ||||||||||||||||||||    
T  31608796 attagtgacgtggcagtgattaagtg--gggagagggacgaaattttaaatgatta 31608849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 195
Target Start/End: Original strand, 23698535 - 23698643
Alignment:
Q  85 cgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaatttta 184  Q
    |||||||||||||||| |  ||||||| ||||||||||||||||||||||   |||||||  ||| || |||||| | | | | |||  ||||| |||||    
T  23698535 cgtgacagtgattaagtg--gggagagggacgaaattttaaatgattaaacaatgcaagggtaaattgccaggattagcgattacagggaccaattttta 23698632  T
Q  185 aacgaccccta 195  Q
    |||||||||||    
T  23698633 aacgaccccta 23698643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 31873005 - 31872946
Alignment:
Q  107 gagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaa 166  Q
    ||||| || ||||||||||||||||||||||||  |||| ||| ||||||||| ||||||    
T  31873005 gagagagatgaaattttaaatgattaaattttgggaggataaattgtcaggattaacaaa 31872946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 35756727 - 35756647
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggat 159  Q
    ||||||||| || ||||||||||| |  ||||||| ||||||||||||||||||||||   | |||||| ||| |||||||||    
T  35756727 attagtgacatggcagtgattaagtg--gggagagggacgaaattttaaatgattaaacaattcaaggataaattgtcaggat 35756647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 36325354 - 36325263
Alignment:
Q  104 ggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgaccccta 195  Q
    |||||||| |||||||||||||||||||||   ||||||||  ||| || |||||| ||||| | |||  || || ||||||||||||||||    
T  36325354 ggggagagggacgaaattttaaatgattaacaattgcaaggctaaattgccaggattaacaattacagggacgaatttttaaacgaccccta 36325263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 2535867 - 2535977
Alignment:
Q  113 gacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgcagagatgaaaca 212  Q
    |||||||||||||||||||||| |||| ||||  ||  || |||||| ||| | | |||  ||||| ||||||| |||||||| |||||| || |||| |    
T  2535867 gacgaaattttaaatgattaaactttgtaagggtaatttgccaggattaacgattacagggaccaatttttaaatgacccctaattgcagggacgaaata 2535966  T
Q  213 catataaaagc 223  Q
    ||||| |||||    
T  2535967 catattaaagc 2535977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 20050202 - 20050109
Alignment:
Q  105 gggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctattt 198  Q
    ||||||| ||||||||||||| |||||||||||||  ||| ||||||| ||| || ||  ||| ||   ||||| ||||||| |||||||||||    
T  20050202 gggagagggacgaaattttaagtgattaaattttggcagggcaaaatgccagaattaaggaatacatggaccaatttttaaatgacccctattt 20050109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 11674814 - 11674718
Alignment:
Q  105 gggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaaccaaattttaaacgacccctatttgca 201  Q
    ||||||| |||||||||||||||||||||   ||||||||  ||| || |||||| ||||| | |||  || || ||||||||||| |||| |||||    
T  11674814 gggagagggacgaaattttaaatgattaacaattgcaaggctaaattgccaggattaacaattacagggacgaatttttaaacgacgcctaattgca 11674718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 37846 - 37984
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggatcaacaaattcagaaacc 176  Q
    |||||||||||| ||||||||||| |  ||||||| ||||||||||||||||||||||   | |||||  ||| ||||||||| | | | | || | |||    
T  37846 attagtgacgtggcagtgattaagtg--gggagagggacgaaattttaaatgattaaacaatacaagggtaaattgtcaggattagcgattacaaagacc 37943  T
Q  177 aaattttaaacgacccctatttgcagagatgaaacacatat 217  Q
    || ||||||||||| |||| |||||  ||||||| ||||||    
T  37944 aatttttaaacgactcctaattgcaaggatgaaatacatat 37984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 69110 - 69055
Alignment:
Q  77 attagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaa 134  Q
    |||||||||||| ||||||||||| |  ||||||| ||||||||||||||||||||||    
T  69110 attagtgacgtggcagtgattaagtg--gggagagggacgaaattttaaatgattaaa 69055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 14076 - 14153
Alignment:
Q  79 tagtgacgtgacagtgattaagcgaggggagagtgacgaaattttaaatgattaaattttgcaaggacaaaatgtcaggat 159  Q
    ||||||||||||| |||||||| | |||   || ||| |||||||||||||||||||||||  ||| |||||| |||||||    
T  14076 tagtgacgtgacaatgattaagtggggg---agggaccaaattttaaatgattaaattttgggagggcaaaatatcaggat 14153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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