View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_low_15 (Length: 416)
Name: NF3485_low_15
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 18101207 - 18101450
Alignment:
| Q |
13 |
aatataaagaaagctaaaaggaaagttaatgattgcattttttggtattatgttgagtttgaatattgtgttgagtttggactttggagtagtgggtgag |
112 |
Q |
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| T |
18101207 |
aatataaagaaagctaaaaggaaagctaatgattgcattttttggtattatgttgagtttgaatattgtgttgagtttggactttggagtagtgggtgag |
18101306 |
T |
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| Q |
113 |
atgctgggaaatttgtttggtgttagtacataaattggattgggtaataatagcatgcggatgaaatgagagttgatatggttcacaaggttttgaaagc |
212 |
Q |
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| T |
18101307 |
atgctgggaaatttgtttggtgttagtacataaattggattgggtaataatagcatacggatgaaatgagagttgatatggttcacaaggttttgaaagc |
18101406 |
T |
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| Q |
213 |
ttcgaagaaaagtgtgtcagagaatttgacagtttgtggtgtcc |
256 |
Q |
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| T |
18101407 |
tttgaagaaaagtgtgtcagagaatttgacagtttgtggtgtcc |
18101450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 37858815 - 37859058
Alignment:
| Q |
13 |
aatataaagaaagctaaaaggaaagttaatgattgcattttttggtattatgttgagtttgaatattgtgttgagtttggactttggagtagtgggtgag |
112 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37858815 |
aatataaagaaagctaaaaggaaagctaatgattgcattttttggtattatgttgagtttgaatattgtgttgagtttggactttggagtagtgggtgag |
37858914 |
T |
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| Q |
113 |
atgctgggaaatttgtttggtgttagtacataaattggattgggtaataatagcatgcggatgaaatgagagttgatatggttcacaaggttttgaaagc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37858915 |
atgctgggaaatttgtttggtgttagtacataaattggattgggtaataatagcatacggatgaaatgagagttgatatggttcacaaggttttgaaagc |
37859014 |
T |
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| Q |
213 |
ttcgaagaaaagtgtgtcagagaatttgacagtttgtggtgtcc |
256 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859015 |
tttgaagaaaagtgtgtcagagaatttgacagtttgtggtgtcc |
37859058 |
T |
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