View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_low_18 (Length: 365)
Name: NF3485_low_18
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 14873484 - 14873146
Alignment:
| Q |
12 |
agtatgcttagtccaagaccattctctaaaagggctgaagttgttcttccagcaaaaccaactgactaactgtacatatatgcaggatcagccaaccata |
111 |
Q |
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| T |
14873484 |
agtatgcttagtccaagaccattctctaaaagggctgaagttgttcttccagcaaaaccaactgaacaactgtacatatatgcaggatcaaccagccata |
14873385 |
T |
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| Q |
112 |
gacaaatgcctagtgaactcaaacaacagaaagtgctacctgatcgttgaattctataatagattgagttgttggtatgaaagttctttgaaaagagagg |
211 |
Q |
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| T |
14873384 |
gacaaatgcccggtgaactcaaacaacagaaagtgctacctgatcgttgaattctataatagattgagttgttggtatgaaagttctttgaaaagagagg |
14873285 |
T |
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| Q |
212 |
cctggaaatcttgcacaaatcgannnnnnncacggtcagaccactaaagccctgataaagagaggcctgaaaatcttgc-aaaaatcgaatggaatggaa |
310 |
Q |
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| T |
14873284 |
cctggaaatcttgcaaaaatcgatttttttcacggtcagaccactaaagccctgataaagagaggcctgaaaatcttgcaaaaaatcgaatggaatggaa |
14873185 |
T |
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| Q |
311 |
aaattgcactgtcactccgaagcttaaacccaagtcaca |
349 |
Q |
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| T |
14873184 |
aaattgcactgtcactccgaagcttaaacccaagtcaca |
14873146 |
T |
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