View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3485_low_19 (Length: 352)

Name: NF3485_low_19
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3485_low_19
NF3485_low_19
[»] chr4 (14 HSPs)
chr4 (154-331)||(4089810-4089993)
chr4 (43-106)||(44362664-44362727)
chr4 (44-99)||(37496703-37496758)
chr4 (51-96)||(13307883-13307928)
chr4 (40-97)||(18513248-18513305)
chr4 (38-89)||(34589721-34589772)
chr4 (45-99)||(13117429-13117483)
chr4 (45-99)||(14465299-14465353)
chr4 (44-86)||(28663491-28663533)
chr4 (63-97)||(45615422-45615456)
chr4 (61-98)||(683068-683105)
chr4 (61-97)||(9988706-9988742)
chr4 (61-97)||(22596987-22597023)
chr4 (59-99)||(40224503-40224543)
[»] scaffold0314 (1 HSPs)
scaffold0314 (50-104)||(8953-9007)
[»] chr6 (9 HSPs)
chr6 (44-96)||(10031569-10031621)
chr6 (44-99)||(19369816-19369871)
chr6 (50-99)||(6751887-6751936)
chr6 (61-99)||(10158000-10158038)
chr6 (45-98)||(5579654-5579707)
chr6 (38-91)||(1334654-1334707)
chr6 (50-87)||(29959180-29959217)
chr6 (61-97)||(7942271-7942307)
chr6 (61-97)||(9024183-9024219)
[»] chr1 (3 HSPs)
chr1 (45-99)||(14332409-14332462)
chr1 (46-97)||(40176604-40176655)
chr1 (63-99)||(31667443-31667479)
[»] chr2 (8 HSPs)
chr2 (46-99)||(43586010-43586063)
chr2 (45-97)||(18512149-18512201)
chr2 (44-99)||(45000851-45000905)
chr2 (49-98)||(13501084-13501133)
chr2 (38-95)||(39399905-39399962)
chr2 (46-97)||(18570973-18571024)
chr2 (48-99)||(33884054-33884105)
chr2 (46-99)||(14373432-14373485)
[»] chr7 (12 HSPs)
chr7 (46-97)||(5937428-5937479)
chr7 (44-99)||(38134411-38134466)
chr7 (45-99)||(1885573-1885627)
chr7 (38-96)||(35238192-35238250)
chr7 (52-97)||(2144546-2144591)
chr7 (51-96)||(48964070-48964115)
chr7 (55-95)||(2143862-2143902)
chr7 (40-99)||(25956442-25956499)
chr7 (61-96)||(44172898-44172933)
chr7 (46-99)||(22801746-22801799)
chr7 (51-96)||(28635178-28635223)
chr7 (61-97)||(37775998-37776034)
[»] chr8 (9 HSPs)
chr8 (45-99)||(24295142-24295196)
chr8 (46-96)||(27733848-27733898)
chr8 (45-98)||(26915246-26915299)
chr8 (45-97)||(42874522-42874574)
chr8 (55-98)||(31119097-31119140)
chr8 (45-104)||(31548293-31548352)
chr8 (45-98)||(34073984-34074037)
chr8 (65-97)||(1586628-1586660)
chr8 (63-99)||(32696382-32696418)
[»] chr5 (8 HSPs)
chr5 (45-91)||(30080514-30080560)
chr5 (47-97)||(38784808-38784858)
chr5 (61-98)||(10009842-10009879)
chr5 (52-99)||(10010561-10010608)
chr5 (44-106)||(19167574-19167637)
chr5 (48-98)||(26205766-26205816)
chr5 (242-331)||(42594443-42594532)
chr5 (45-77)||(309158-309190)
[»] chr3 (8 HSPs)
chr3 (45-99)||(49179720-49179774)
chr3 (50-106)||(14338481-14338537)
chr3 (61-111)||(20691335-20691385)
chr3 (61-99)||(44427857-44427895)
chr3 (61-97)||(9210832-9210868)
chr3 (62-94)||(34409352-34409384)
chr3 (51-91)||(42076762-42076802)
chr3 (50-102)||(52558130-52558182)
[»] scaffold0024 (1 HSPs)
scaffold0024 (45-88)||(18124-18167)


Alignment Details
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 154 - 331
Target Start/End: Complemental strand, 4089993 - 4089810
Alignment:
Q  154 acacttaataaaccaagaaagcatttatat----gattaaacatccat----gatattgaagagaattat-acctgtgatgatgagtgatgaatttgttg 244  Q
    ||||||||||||||||||||||||||||||    ||| ||||||||||    |||||| ||||||||||| |||| || ||||||||||||||||||       
T  4089993 acacttaataaaccaagaaagcatttatatatttgatcaaacatccatcgatgatattaaagagaattattacctctgctgatgagtgatgaatttg--- 4089897  T
Q  245 accacgaagaacttcacaaacaccgtcaaccccaccaaactcgagaagagatttcaagtccttttccttcacaattcctgcaatatc 331  Q
    |||||| ||||| |||||||| |   |||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||    
T  4089896 accacggagaacatcacaaactctaccaaccccaccaaactcaagaagagacttcaagtccttctccttcacaattccagcaatatc 4089810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 44362664 - 44362727
Alignment:
Q  43 ctgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcggcgtcaga 106  Q
    ||||||||||||||||| |||||||||||||||||| || ||||||||| |||| || ||||||    
T  44362664 ctgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcaga 44362727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 37496703 - 37496758
Alignment:
Q  44 tgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    ||||||||||||  || ||||||||||||||||||||| ||||||||| |||||||    
T  37496703 tgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgtcgg 37496758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 13307883 - 13307928
Alignment:
Q  51 gataaaattgtgagaaaatgacataattcaacgtaatcacatgtgt 96  Q
    ||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  13307883 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 13307928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 18513305 - 18513248
Alignment:
Q  40 acactgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 97  Q
    |||| ||||||||||| | | ||||||||||||||||||||| ||||||| |||||||    
T  18513305 acacagacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtc 18513248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 34589772 - 34589721
Alignment:
Q  38 acacactgacaccgataaaattgtgagaaaatgacataattcaacgtaatca 89  Q
    ||||| |||||||||||| | | ||||||||||||||||||||| |||||||    
T  34589772 acacattgacaccgataacaatttgagaaaatgacataattcaatgtaatca 34589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 13117429 - 13117483
Alignment:
Q  45 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    |||||| ||||||||  |||||||||||| ||||||| ||||||||| |||||||    
T  13117429 gacaccaataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgtcgg 13117483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 14465353 - 14465299
Alignment:
Q  45 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    ||||||||||| | | |||||||||||||||||||||  |||||| |||||||||    
T  14465353 gacaccgataataatttgagaaaatgacataattcaatttaatcatatgtgtcgg 14465299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 28663491 - 28663533
Alignment:
Q  44 tgacaccgataaaattgtgagaaaatgacataattcaacgtaa 86  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||    
T  28663491 tgacacggataaaattttgagaaaatgacataattcaatgtaa 28663533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 97
Target Start/End: Complemental strand, 45615456 - 45615422
Alignment:
Q  63 agaaaatgacataattcaacgtaatcacatgtgtc 97  Q
    |||||||||||||||| ||||||||||||||||||    
T  45615456 agaaaatgacataattgaacgtaatcacatgtgtc 45615422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 683068 - 683105
Alignment:
Q  61 tgagaaaatgacataattcaacgtaatcacatgtgtcg 98  Q
    |||||||||||||||||| || ||||||||||||||||    
T  683068 tgagaaaatgacataattgaatgtaatcacatgtgtcg 683105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 9988742 - 9988706
Alignment:
Q  61 tgagaaaatgacataattcaacgtaatcacatgtgtc 97  Q
    |||||||||||||||||| || |||||||||||||||    
T  9988742 tgagaaaatgacataattgaatgtaatcacatgtgtc 9988706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 22597023 - 22596987
Alignment:
Q  61 tgagaaaatgacataattcaacgtaatcacatgtgtc 97  Q
    |||||||||  ||||||||||||||||||||||||||    
T  22597023 tgagaaaattgcataattcaacgtaatcacatgtgtc 22596987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 40224543 - 40224503
Alignment:
Q  59 tgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  40224543 tgtgagaaaatgacataatttaatgtaatcatatgtgtcgg 40224503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 8953 - 9007
Alignment:
Q  50 cgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcggcgtca 104  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||    
T  8953 cgataaaattttgagaaaatgacataattcaacgtaatcacaagtgtcggtgtca 9007  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 10031569 - 10031621
Alignment:
Q  44 tgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgt 96  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  10031569 tgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 10031621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 19369816 - 19369871
Alignment:
Q  44 tgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  19369816 tgacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcgg 19369871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 6751936 - 6751887
Alignment:
Q  50 cgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    |||||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  6751936 cgataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcgg 6751887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 10158000 - 10158038
Alignment:
Q  61 tgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  10158000 tgagaaaatgacataattcaatgtaatcacatgtgtcgg 10158038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 5579654 - 5579707
Alignment:
Q  45 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcg 98  Q
    ||||||||||||||| ||||||||||||||| ||||| ||| ||||| ||||||    
T  5579654 gacaccgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 5579707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 1334654 - 1334707
Alignment:
Q  38 acacactgacaccgataaaattgtgagaaaatgacataattcaacgtaatcaca 91  Q
    ||||| |||||| ||||||||| ||| |||| |||||||||||| |||||||||    
T  1334654 acacattgacacggataaaattttgaaaaaaggacataattcaatgtaatcaca 1334707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 29959180 - 29959217
Alignment:
Q  50 cgataaaattgtgagaaaatgacataattcaacgtaat 87  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  29959180 cgataaaattttgagaaaatgacataattcaatgtaat 29959217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 7942271 - 7942307
Alignment:
Q  61 tgagaaaatgacataattcaacgtaatcacatgtgtc 97  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  7942271 tgagacaatgacataattcaatgtaatcacatgtgtc 7942307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 9024219 - 9024183
Alignment:
Q  61 tgagaaaatgacataattcaacgtaatcacatgtgtc 97  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  9024219 tgagaaaatgacataattcaatgtaatcatatgtgtc 9024183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 14332409 - 14332462
Alignment:
Q  45 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||    
T  14332409 gacaccgataaaatt-tgagaaaatgacataattcaatgtaatcacatatgtcgg 14332462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 40176604 - 40176655
Alignment:
Q  46 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 97  Q
    |||||||||||||| |||||||||||| | |||||| |||||||||||||||    
T  40176604 acaccgataaaattttgagaaaatgacttcattcaatgtaatcacatgtgtc 40176655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 31667443 - 31667479
Alignment:
Q  63 agaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    |||||||||||||||| || |||||||||||||||||    
T  31667443 agaaaatgacataattaaatgtaatcacatgtgtcgg 31667479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 43586063 - 43586010
Alignment:
Q  46 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  43586063 acacagataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcgg 43586010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 18512201 - 18512149
Alignment:
Q  45 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 97  Q
    ||||||||||||||| ||||||||| | ||||||||| |||||||||||||||    
T  18512201 gacaccgataaaattttgagaaaataatataattcaatgtaatcacatgtgtc 18512149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 45000905 - 45000851
Alignment:
Q  44 tgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||| |||||||||    
T  45000905 tgacaccgataaaatt-tgagaaaatgacacaattcaatgtaatcatatgtgtcgg 45000851  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 13501133 - 13501084
Alignment:
Q  49 ccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcg 98  Q
    ||||||||||| | ||||||||||||||||||| ||||||||| ||||||    
T  13501133 ccgataaaattttaagaaaatgacataattcaatgtaatcacaagtgtcg 13501084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 39399905 - 39399962
Alignment:
Q  38 acacactgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtg 95  Q
    ||||| |||||||||| ||||| | |||||||||||||||||||| || |||||||||    
T  39399905 acacattgacaccgatgaaatttttagaaaatgacataattcaacctattcacatgtg 39399962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 18570973 - 18571024
Alignment:
Q  46 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 97  Q
    |||||||||| | | ||||||||||||||||||||| ||||||| |||||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtc 18571024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 33884054 - 33884105
Alignment:
Q  48 accgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    ||||||||||||||||||||||||||| |||||  ||||| ||| |||||||    
T  33884054 accgataaaattgtgagaaaatgacatgattcagtgtaattacaagtgtcgg 33884105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 14373485 - 14373432
Alignment:
Q  46 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    ||||| |||||||| |||   ||||||||||||||| |||||||||||||||||    
T  14373485 acaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcgg 14373432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 5937479 - 5937428
Alignment:
Q  46 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 97  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||| |||||    
T  5937479 acacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtc 5937428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 38134466 - 38134411
Alignment:
Q  44 tgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    |||||||||||| | | ||||||||||||||||||||| ||||||| |||||||||    
T  38134466 tgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcgg 38134411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 1885573 - 1885627
Alignment:
Q  45 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    ||||| ||||||||| ||| ||||||||||||||||| ||||||||| |||||||    
T  1885573 gacacggataaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcgg 1885627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 35238250 - 35238192
Alignment:
Q  38 acacactgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgt 96  Q
    ||||| |||||||||||| ||| |||||||||||||||||||||  |||||||| ||||    
T  35238250 acacattgacaccgataatattttgagaaaatgacataattcaatataatcacacgtgt 35238192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 2144591 - 2144546
Alignment:
Q  52 ataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 97  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||    
T  2144591 ataaaattttgagaaaatgacataattcaatgtaatcacacgtgtc 2144546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 48964115 - 48964070
Alignment:
Q  51 gataaaattgtgagaaaatgacataattcaacgtaatcacatgtgt 96  Q
    |||||||||||||||||||||||||||||||  |||||||| ||||    
T  48964115 gataaaattgtgagaaaatgacataattcaatttaatcacaagtgt 48964070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 2143902 - 2143862
Alignment:
Q  55 aaattgtgagaaaatgacataattcaacgtaatcacatgtg 95  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  2143902 aaattttgagaaaatgacataattcaatgtaatcacatgtg 2143862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 25956442 - 25956499
Alignment:
Q  40 acactgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    ||||||||||  ||||||||||||  |||||||||||||||| ||||||||| |||||||    
T  25956442 acactgacacaaataaaattgtga--aaatgacataattcaatgtaatcacaagtgtcgg 25956499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 44172933 - 44172898
Alignment:
Q  61 tgagaaaatgacataattcaacgtaatcacatgtgt 96  Q
    ||||||||||||||||||||| ||||||||||||||    
T  44172933 tgagaaaatgacataattcaatgtaatcacatgtgt 44172898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 22801799 - 22801746
Alignment:
Q  46 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    |||||||| ||||| ||||| ||||||||||||||  ||||||||| |||||||    
T  22801799 acaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcgg 22801746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 28635223 - 28635178
Alignment:
Q  51 gataaaattgtgagaaaatgacataattcaacgtaatcacatgtgt 96  Q
    ||||||||| |||||||||  || ||||||||||||||||||||||    
T  28635223 gataaaattttgagaaaatttcacaattcaacgtaatcacatgtgt 28635178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 37775998 - 37776034
Alignment:
Q  61 tgagaaaatgacataattcaacgtaatcacatgtgtc 97  Q
    |||||||||||||||||| || |||||||||||||||    
T  37775998 tgagaaaatgacataattaaatgtaatcacatgtgtc 37776034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 24295196 - 24295142
Alignment:
Q  45 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    |||| |||||||||||||||||||||||| |||| || ||||||||| |||||||    
T  24295196 gacatcgataaaattgtgagaaaatgacacaatttaatgtaatcacaagtgtcgg 24295142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 27733848 - 27733898
Alignment:
Q  46 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgt 96  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||||| ||||    
T  27733848 acaccgataaaattttgagaaaatgatataattcaatgtaatcacaagtgt 27733898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 26915299 - 26915246
Alignment:
Q  45 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcg 98  Q
    ||||| ||||||||| |||||||||||||||||| || ||||||||| ||||||    
T  26915299 gacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcg 26915246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 42874522 - 42874574
Alignment:
Q  45 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 97  Q
    ||||||| ||| ||| ||||||||||||||||||||| ||||||||| |||||    
T  42874522 gacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgtc 42874574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 31119097 - 31119140
Alignment:
Q  55 aaattgtgagaaaatgacataattcaacgtaatcacatgtgtcg 98  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaatcacaagtgtcg 31119140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 31548352 - 31548293
Alignment:
Q  45 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcggcgtca 104  Q
    |||||||||||   | ||| ||||||||||||||||| ||||||||||||||||| ||||    
T  31548352 gacaccgataattatttgataaaatgacataattcaatgtaatcacatgtgtcggtgtca 31548293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 34074037 - 34073984
Alignment:
Q  45 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcg 98  Q
    ||||||||||||||| ||| |||||||||||||| || ||||||| | ||||||    
T  34074037 gacaccgataaaattttgaaaaaatgacataatttaatgtaatcataagtgtcg 34073984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 1586628 - 1586660
Alignment:
Q  65 aaaatgacataattcaacgtaatcacatgtgtc 97  Q
    |||||||||||||| ||||||||||||||||||    
T  1586628 aaaatgacataattgaacgtaatcacatgtgtc 1586660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 32696382 - 32696418
Alignment:
Q  63 agaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  32696382 agaaaatgacataattgaacataatcacatgtgtcgg 32696418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 30080560 - 30080514
Alignment:
Q  45 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcaca 91  Q
    ||||| ||||||||| ||||||||||||||||||||| |||||||||    
T  30080560 gacactgataaaattttgagaaaatgacataattcaatgtaatcaca 30080514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 38784808 - 38784858
Alignment:
Q  47 caccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 97  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||| |||||    
T  38784808 caccgataaaattgtgaaaaaatgatataattcaatgtaatcacaagtgtc 38784858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 10009842 - 10009879
Alignment:
Q  61 tgagaaaatgacataattcaacgtaatcacatgtgtcg 98  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  10009842 tgagaaaatgacataattcaatgtaatcacatgtgtcg 10009879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 10010561 - 10010608
Alignment:
Q  52 ataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    |||||||| ||| ||||||||||||||||  |||||||||||||||||    
T  10010561 ataaaattttgaaaaaatgacataattcattgtaatcacatgtgtcgg 10010608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 19167637 - 19167574
Alignment:
Q  44 tgacaccgataaaattgtg-agaaaatgacataattcaacgtaatcacatgtgtcggcgtcaga 106  Q
    |||||||||||||||| || | ||||||||| ||||||| ||||||||| ||||||| ||||||    
T  19167637 tgacaccgataaaattttgaaaaaaatgacacaattcaatgtaatcacaagtgtcggtgtcaga 19167574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 26205816 - 26205766
Alignment:
Q  48 accgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcg 98  Q
    |||||||||||| ||||||||||||||||||||  ||||||| | ||||||    
T  26205816 accgataaaattttgagaaaatgacataattcagtgtaatcataggtgtcg 26205766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 331
Target Start/End: Original strand, 42594443 - 42594532
Alignment:
Q  242 ttgaccacgaagaacttcacaaacaccgtcaaccccaccaaactcgagaagagatttcaagtccttttccttcacaattcctgcaatatc 331  Q
    ||||||| ||||||  ||||||||   | ||| |||||||| ||| |||||||||||||||||||| |  ||||||||| | ||||||||    
T  42594443 ttgaccatgaagaaaatcacaaactatgccaatcccaccaagctcaagaagagatttcaagtccttctttttcacaatttcagcaatatc 42594532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 309158 - 309190
Alignment:
Q  45 gacaccgataaaattgtgagaaaatgacataat 77  Q
    ||||||||||||||| |||||||||||||||||    
T  309158 gacaccgataaaattttgagaaaatgacataat 309190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 49179774 - 49179720
Alignment:
Q  45 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    ||||||||||||||| ||||||| ||||||||||| | ||||||||| |||||||    
T  49179774 gacaccgataaaattttgagaaagtgacataattcgatgtaatcacaagtgtcgg 49179720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 14338537 - 14338481
Alignment:
Q  50 cgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcggcgtcaga 106  Q
    |||||||||| ||| ||||||||||||||||| |||||||||  |||||| ||||||    
T  14338537 cgataaaattttgaaaaaatgacataattcaatgtaatcacaaatgtcggtgtcaga 14338481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 20691335 - 20691385
Alignment:
Q  61 tgagaaaatgacataattcaacgtaatcacatgtgtcggcgtcagagacac 111  Q
    ||||||||||||||||||||  ||||||| ||||||||| |||||| ||||    
T  20691335 tgagaaaatgacataattcagtgtaatcatatgtgtcggtgtcagacacac 20691385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 44427857 - 44427895
Alignment:
Q  61 tgagaaaatgacataattcaacgtaatcacatgtgtcgg 99  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  44427857 tgagaaaatgacataatccaatgtaatcacatgtgtcgg 44427895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 9210868 - 9210832
Alignment:
Q  61 tgagaaaatgacataattcaacgtaatcacatgtgtc 97  Q
    ||||||||||||||||||||| | |||||||||||||    
T  9210868 tgagaaaatgacataattcaatggaatcacatgtgtc 9210832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 94
Target Start/End: Complemental strand, 34409384 - 34409352
Alignment:
Q  62 gagaaaatgacataattcaacgtaatcacatgt 94  Q
    |||||||||||||||||||| ||||||||||||    
T  34409384 gagaaaatgacataattcaatgtaatcacatgt 34409352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 42076802 - 42076762
Alignment:
Q  51 gataaaattgtgagaaaatgacataattcaacgtaatcaca 91  Q
    |||||||||||| ||||||||| |||||||| |||||||||    
T  42076802 gataaaattgtgggaaaatgacctaattcaatgtaatcaca 42076762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 52558182 - 52558130
Alignment:
Q  50 cgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcggcgt 102  Q
    |||||||| | |||||||| |||||||||||| ||||||||||| || |||||    
T  52558182 cgataaaaatttgagaaaaggacataattcaatgtaatcacatgcgtgggcgt 52558130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 18167 - 18124
Alignment:
Q  45 gacaccgataaaattgtgagaaaatgacataattcaacgtaatc 88  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||||    
T  18167 gacaccgataaaattttgagaaaataacataattcaatgtaatc 18124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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