View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_low_20 (Length: 348)
Name: NF3485_low_20
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 2785102 - 2785363
Alignment:
| Q |
1 |
caaatgaaatataacgtgggataaatcttgtatgagatataacatcattttatgatgtacaagtgtcgagtgagatgaatcttgtatcatagataaattt |
100 |
Q |
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| T |
2785102 |
caaatgaaatataatgtgggataaatcttttatgagatataacatcattttatgatgtacaagtgtcaagtgggataaatcttgtatcatagataaattt |
2785201 |
T |
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| Q |
101 |
atttatatcattggaatcagcaaattacatcattagatcaaatgaaatataatgtgattattattaatctaatgctagaaaataaacttgtttatagact |
200 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2785202 |
gtttatatcattg-aatcagcaaattacattattagatcaaatgaaatataatgtgattattattaatctaatgctagaaaataaacttgtttatagact |
2785300 |
T |
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| Q |
201 |
ttggtgcaagactatttcacatgtgcgcattggagtattgggcaaagacatgaatctaaattg |
263 |
Q |
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| T |
2785301 |
atggtgcaagactatttcacatgtgcgcattggagtattgggcaaagacatgaatctaaattg |
2785363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 2785388 - 2785425
Alignment:
| Q |
288 |
ctaataagaaatgtgtacgaataataaagagatgaagg |
325 |
Q |
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| T |
2785388 |
ctaataagaaatgtgtacgaataataaagagatgaagg |
2785425 |
T |
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