View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_low_28 (Length: 289)
Name: NF3485_low_28
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 150 - 282
Target Start/End: Complemental strand, 6980125 - 6979993
Alignment:
| Q |
150 |
gtgtatgtgttgtggttgtctactaacaagagcttgccttcaagataagggtgtgcgatgttctacaagttgggttagttgtgattctactcatgaagac |
249 |
Q |
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| T |
6980125 |
gtgtatgtgttgtggttgtctactaacaagagcttgccttcaagataagggtgtgcggtgttctacaagttgggttagttgtgattctactcatgaagac |
6980026 |
T |
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| Q |
250 |
ttgacacatgtaattttttattgcccctttgct |
282 |
Q |
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| T |
6980025 |
ttgacacatgtaattttttattgcccttttgct |
6979993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 6980499 - 6980345
Alignment:
| Q |
1 |
aaagtaataaatggaattgagatattagcactaataaa---tatgacttttggcaaaactaaatacggaataggaaatttattgaatttgactgatgcct |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| |||| ||||||||||||||||| ||| |
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| T |
6980499 |
aaagtaataaatggaattgagatattagcactaataaatactatgacttttgacaaaactaaatagagaatacgaaacttattgaatttgactgaggccg |
6980400 |
T |
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| Q |
98 |
gnnnnnnngactgatttaggggtattttgtcactaaatgttagttatccaatgtg |
152 |
Q |
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| T |
6980399 |
gaaaaaaagactgatttagaggtattttatcactaaatgttagttatccaatgtg |
6980345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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