View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3485_low_3 (Length: 743)
Name: NF3485_low_3
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Original strand, 25104987 - 25105432
Alignment:
| Q |
19 |
ccctccacgtcttaggcccgattctctcattaggactcagctgacccaatccttccaagttcctcttaaaatgcctatgacagatcacagatcagagtga |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
25104987 |
ccctccacgtcttaggcccaattctctcattaggactcagctgacccaatccttccaagttcctcttaaaatgcctatgacagatcgcagatgagagtga |
25105086 |
T |
|
| Q |
119 |
aactttttgtagggttctctagggtattatttcctcaaaccttctaaatgttattctgcattgtatatctttttcttctcttaacataaatgaaaccctc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25105087 |
aactttttgtagggttctctagggtattatttcctcaaaccttctaaatgttattctgcattgtatatctttttcttctcttaacataaatgaaaccctc |
25105186 |
T |
|
| Q |
219 |
tctccccaacctctttgttctttgtcttttaagattaggatacaagatcaaagatggtgtctcctcaagaagttggattctcttggtttttatcaaatgc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25105187 |
tctccccaacctctttgttctttgtcttataagattaggatacaagatcaaagatggtgtctcctcaagaagttggattctcttggtttttatcaaatgc |
25105286 |
T |
|
| Q |
319 |
caccccttaaaatgatttccattacgttcctaattgtattttagacatacattatcatactttcaccatatatattaccctaactttctcaacaattaaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25105287 |
caccccttaaaatgatttccattacgttcctaattgtattttagacatacattatcatactttcacaatatatattaccctaactttctcaacaattaaa |
25105386 |
T |
|
| Q |
419 |
aaccatattgcattgaaacttgtcaaaatgctgtgataatcatcat |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25105387 |
aaccatattgcattgaaacttgtcaaaatgctatgataatcatcat |
25105432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 532 - 722
Target Start/End: Original strand, 25105498 - 25105688
Alignment:
| Q |
532 |
tggaagtttcacctcaatgctagagaaaagagaagaatgaaatgggtgccacaatttccacgctttacctgtgatttgcatcttcannnnnnnnnnnnnn |
631 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
25105498 |
tggaagtttcacctcaatgctagagaaaagagaagaatgaaatgggtgcctcaatttccacgctttacctgtgatttgcatcttccttttttcttttctt |
25105597 |
T |
|
| Q |
632 |
nnnnattacatattttgttgttacgtgcatttctttcaatttgagacatggcaatccgtccattactatacttttagcgtataaatgtcta |
722 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||| |||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25105598 |
ttttattacatattttgttgctacgtgcatttctttccattttggacatgccaatccgtccattactatacttttagtgtataaatgtcta |
25105688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University