View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3485_low_30 (Length: 264)
Name: NF3485_low_30
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_low_30 |
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| [»] scaffold0105 (5 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold1330 (1 HSPs) |
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| [»] scaffold0496 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 7458181 - 7458417
Alignment:
| Q |
18 |
accattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattc |
117 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7458181 |
accattggaagatttcctgagcaagccacctcaatgaaaggttggggattagcttttcgtgcatgtggagatatgctaatttttcttggaggtcccattc |
7458280 |
T |
|
| Q |
118 |
ttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgta |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7458281 |
ttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcaagaaagaaaatagggagctttgtgta |
7458380 |
T |
|
| Q |
218 |
tagttgcattgtgatgggatgttgatgatgttctctg |
254 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |
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| T |
7458381 |
tagttgcactgtgatgggatgttgatgatgttctctg |
7458417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 7412102 - 7412339
Alignment:
| Q |
18 |
accattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattc |
117 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7412102 |
accattggaagatttcctgagcaagccacctcaatgaaaggttggggattagcttttcgtgcatgtggagatatgctaatttttcttggaggtcccattc |
7412201 |
T |
|
| Q |
118 |
ttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgta |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7412202 |
ttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcaagaaagaaaatagggagctttgtgta |
7412301 |
T |
|
| Q |
218 |
tagttgcattgtgatgggatg-ttgatgatgttctctg |
254 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||| |
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| T |
7412302 |
tagttgcactgtgatgggatgtttgatgatgttctctg |
7412339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 13031387 - 13031461
Alignment:
| Q |
177 |
tggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatgatgttct |
251 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||| ||| |||| |||||||||||||||||| |||||| |
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| T |
13031387 |
tggaatcaacttgcgagaaagcaatcagggagctttgtgcataactgcactgtgatgggatgttgatgttgttct |
13031461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 7419439 - 7419361
Alignment:
| Q |
173 |
acaatggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatgatgttct |
251 |
Q |
| |
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|||||||||||| |||||||||||| || ||||||||||||| ||| |||| ||||||||||| |||||| |||||| |
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| T |
7419439 |
acaatggaatcagcttgcgagaaagcaatcagggagctttgtgcataactgcactgtgatgggatattgatgttgttct |
7419361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 3657 - 3433
Alignment:
| Q |
20 |
cattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattctt |
119 |
Q |
| |
|
||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||| ||| | ||||| |||||||| || || |
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| T |
3657 |
cattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggagatcatctattatttcttggaggtcctgttatt |
3558 |
T |
|
| Q |
120 |
cattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgtata |
219 |
Q |
| |
|
||| || || ||| ||||||||||||||||| ||||||||||| ||| | ||||||||||| ||||| |||| || |||| | |||||| ||| |
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| T |
3557 |
catggtggaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggcttgcaggaaatcaatcagggggttttgtgcata |
3458 |
T |
|
| Q |
220 |
gttgcattgtgatgggatgttgatg |
244 |
Q |
| |
|
||| | |||||||||||||||||| |
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| T |
3457 |
attgtactgtgatgggatgttgatg |
3433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 15804 - 15580
Alignment:
| Q |
20 |
cattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattctt |
119 |
Q |
| |
|
||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||| ||| | ||||| |||||||| || || |
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|
| T |
15804 |
cattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggagatcatctattatttcttggaggtcctgttatt |
15705 |
T |
|
| Q |
120 |
cattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgtata |
219 |
Q |
| |
|
||| || || ||| ||||||||||||||||| ||||||||||| ||| | ||||||||||| ||||| |||| || |||| | |||||| ||| |
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| T |
15704 |
catggtggaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggcttgcaggaaatcaatcagggggttttgtgcata |
15605 |
T |
|
| Q |
220 |
gttgcattgtgatgggatgttgatg |
244 |
Q |
| |
|
||| | |||||||||||||||||| |
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| T |
15604 |
attgtactgtgatgggatgttgatg |
15580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 35435 - 35659
Alignment:
| Q |
20 |
cattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattctt |
119 |
Q |
| |
|
||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||| ||| | ||||| |||||||| || || |
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|
| T |
35435 |
cattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggagatcatctattatttcttggaggtcctgttatt |
35534 |
T |
|
| Q |
120 |
cattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgtata |
219 |
Q |
| |
|
||| || || ||| ||||||||||||||||| ||||||||||| ||| | ||||||||||| ||||| |||| || |||| | |||||| ||| |
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|
| T |
35535 |
catggtggaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggcttgcaggaaatcaatcagggggttttgtgcata |
35634 |
T |
|
| Q |
220 |
gttgcattgtgatgggatgttgatg |
244 |
Q |
| |
|
||| | |||||||||||||||||| |
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|
| T |
35635 |
attgtactgtgatgggatgttgatg |
35659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 49035 - 49259
Alignment:
| Q |
20 |
cattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattctt |
119 |
Q |
| |
|
||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||| ||| | ||||| |||||||| || || |
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|
| T |
49035 |
cattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggagatcatctattatttcttggaggtcctgttatt |
49134 |
T |
|
| Q |
120 |
cattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgtata |
219 |
Q |
| |
|
||| || || ||| ||||||||||||||||| ||||||||||| ||| | ||||||||||| ||||| |||| || |||| | |||||| ||| |
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|
| T |
49135 |
catggtggaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggcttgcaggaaatcaatcagggggttttgtgcata |
49234 |
T |
|
| Q |
220 |
gttgcattgtgatgggatgttgatg |
244 |
Q |
| |
|
||| | |||||||||||||||||| |
|
|
| T |
49235 |
attgtactgtgatgggatgttgatg |
49259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 9739 - 9515
Alignment:
| Q |
20 |
cattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattctt |
119 |
Q |
| |
|
||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||| ||| | ||||| |||||||| || || |
|
|
| T |
9739 |
cattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggagatcatctattatttcttggaggtcctgttatt |
9640 |
T |
|
| Q |
120 |
cattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgtata |
219 |
Q |
| |
|
||| || | ||| ||||||||||||||||| ||||||||||| ||| | ||||||||||| ||||| |||| || |||| | |||||| ||| |
|
|
| T |
9639 |
catggtgcaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggcttgcaggaaatcaatcagggggttttgtgcata |
9540 |
T |
|
| Q |
220 |
gttgcattgtgatgggatgttgatg |
244 |
Q |
| |
|
||| | |||||||||||||||||| |
|
|
| T |
9539 |
attgtactgtgatgggatgttgatg |
9515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 3544 - 3320
Alignment:
| Q |
20 |
cattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattctt |
119 |
Q |
| |
|
||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||| ||| | ||||| |||||||| || || |
|
|
| T |
3544 |
cattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggagatcatctattatttcttggaggtcctgttatt |
3445 |
T |
|
| Q |
120 |
cattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgtata |
219 |
Q |
| |
|
||| || | ||| ||||||||||||||||| ||||||||||| ||| | ||||||||||| ||||| |||| || |||| | |||||| ||| |
|
|
| T |
3444 |
catggtgcaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggcttgcaggaaatcaatcagggggttttgtgcata |
3345 |
T |
|
| Q |
220 |
gttgcattgtgatgggatgttgatg |
244 |
Q |
| |
|
||| | |||||||||||||||||| |
|
|
| T |
3344 |
attgtactgtgatgggatgttgatg |
3320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1330 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold1330
Description:
Target: scaffold1330; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 1834 - 1997
Alignment:
| Q |
20 |
cattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattctt |
119 |
Q |
| |
|
||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||| ||| | ||||| |||||||| || || |
|
|
| T |
1834 |
cattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggagatcatctattatttcttggaggtcctgttatt |
1933 |
T |
|
| Q |
120 |
cattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatc |
183 |
Q |
| |
|
||| || | ||| ||||||||||||||||| ||||||||||| ||| | ||||||||||| |
|
|
| T |
1934 |
catggtgcaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatc |
1997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 3032 - 3123
Alignment:
| Q |
20 |
cattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtc |
111 |
Q |
| |
|
||||||||| |||||||||||||| || || |||| ||||||||| |||| ||||| |||||||||||| ||| | ||||| ||||||| |
|
|
| T |
3032 |
cattggaagctttcctgagcaagctacatcggtgaatggttggggactagcatttcgatcatgtggagataaactattatttcttggaggtc |
3123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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