View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3485_low_33 (Length: 255)
Name: NF3485_low_33
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_low_33 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 10782894 - 10783121
Alignment:
| Q |
13 |
aatattggccatatagaaaccaactcattgcatttgcatcccataacacaaactaaatattgattttgtgacacaatttaaccataacttcttggagtac |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10782894 |
aatattggacatatagaaaccaactcattgcatttgcatcccataacacaaactaaatattgattttgtgacacaatttaaccataacttcttggagtac |
10782993 |
T |
|
| Q |
113 |
aatttgacatcaaataatgaatttaataaattccgttagtgcaagatatacaaaaaatgtgtatctactattgaatgcttaaaaatattttcaaaacaca |
212 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10782994 |
agtttgacatcaaataatgaatttaataaattccgttagtgcaagatatacaaaaaatgggtatctactattgaatgcttaaaaatattttcaaaacaca |
10783093 |
T |
|
| Q |
213 |
tcaattaaaatatttttagaatgaaaac |
240 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
10783094 |
tcaattaaaatatttttagaatgaaaac |
10783121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 90 - 240
Target Start/End: Original strand, 23438705 - 23438860
Alignment:
| Q |
90 |
ttaaccataacttcttggagtacaatttgacatcaaataatg-----aatttaataaattccgttagtgcaagatatacaaaaaatgtgtatctactatt |
184 |
Q |
| |
|
||||| || |||||||||| |||||||||| |||||||| || ||| |||| |||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
23438705 |
ttaacaatgacttcttggaatacaatttgatatcaaatattgcttctaatgtaatcaattccgttagtgcaagatatacaaaaaatgtatatctactaat |
23438804 |
T |
|
| Q |
185 |
gaatgcttaaaaatattttcaaaacacatcaattaaaatatttttagaatgaaaac |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23438805 |
gaatgcttaaaaatattttcaaaacacatcaattaaaatatttttagaatgaaaac |
23438860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 103 - 238
Target Start/End: Complemental strand, 23438665 - 23438525
Alignment:
| Q |
103 |
cttggagtacaatttgacatcaaataatg-----aatttaataaattccgttagtgcaagatatacaaaaaatgtgtatctactattgaatgcttaaaaa |
197 |
Q |
| |
|
|||||| |||||||||| |||||||| || ||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23438665 |
cttggaatacaatttgatatcaaatattgcttctaatgtaatcaattccgttagcgcaagatatacaaaaaatgtgtatctactattgaatgcttaaaaa |
23438566 |
T |
|
| Q |
198 |
tattttcaaaacacatcaattaaaatatttttagaatgaaa |
238 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||| |
|
|
| T |
23438565 |
tattttccaaagacatcaattaaaatatttttataatgaaa |
23438525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 8674160 - 8674031
Alignment:
| Q |
111 |
acaatttgacatcaaataatgaatttaataaattccgttagtgcaagatatacaaaaaatgtgtatctactattgaatgcttaaaaatattttcaaaaca |
210 |
Q |
| |
|
||||||| | |||||||| ||||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8674160 |
acaatttaatatcaaatattgaatgtaatcaattccgttagcacaagatatataaaaaatgtgtatctactattgaatgcttaaaaatattttcaaaaca |
8674061 |
T |
|
| Q |
211 |
catcaattaaaatatttttagaatgaaaac |
240 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
8674060 |
catcaattaaaatatttttagaacgaaaac |
8674031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 8674158 - 8674225
Alignment:
| Q |
170 |
tgtgtatctactattgaatgcttaaaaatattttcaaa--acacatcaattaaaatatttttagaatgaaaac |
240 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||| |||||||||||| |
|
|
| T |
8674158 |
tgtgtatctactattgaatgctt----atattttcaaaacacacatcaa-taaactatttctagaatgaaaac |
8674225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 50508940 - 50508870
Alignment:
| Q |
13 |
aatattggccatatagaaaccaactcattgcatttgcatcccataacacaaactaaatattgattttgtga |
83 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50508940 |
aatattggacatatacaaaccaactcattgcatttgcatcccataacacaaactaaatattgattttgtga |
50508870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University