View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_low_34 (Length: 255)
Name: NF3485_low_34
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_low_34 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 43 - 255
Target Start/End: Original strand, 4205701 - 4205913
Alignment:
| Q |
43 |
attatttatagggtgccttcataacgggtttgttctattgataatgatgatgattcctttataagaaggaactataattttacttctcttgattttggac |
142 |
Q |
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| T |
4205701 |
attatttaaaaggtgccttcataacgggtttgttctattgataatgatgatgattcctttataagaaggaactataattttacttctcttgattttggac |
4205800 |
T |
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| Q |
143 |
ctcgttttggtattgacacaagaaatcattagaatatttcatttataaatgtgaaattattttctttgttttccgtaattattttgcattcttgatttgt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4205801 |
ctcgttttggtattgacacaagaaatcattagaatatttcatttataaatttgaaattattttctttgttttccgtaattattttgcattcttgatttgt |
4205900 |
T |
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| Q |
243 |
aaatattctcaat |
255 |
Q |
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||||||||||||| |
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| T |
4205901 |
aaatattctcaat |
4205913 |
T |
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