View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3485_low_37 (Length: 251)

Name: NF3485_low_37
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3485_low_37
NF3485_low_37
[»] chr3 (15 HSPs)
chr3 (81-241)||(29542340-29542500)
chr3 (89-235)||(41878686-41878834)
chr3 (82-235)||(22533989-22534145)
chr3 (82-222)||(42806261-42806401)
chr3 (94-241)||(19979231-19979378)
chr3 (89-209)||(53876866-53876986)
chr3 (89-203)||(6925945-6926059)
chr3 (94-184)||(37537238-37537328)
chr3 (92-213)||(6894190-6894311)
chr3 (97-185)||(47160990-47161078)
chr3 (158-194)||(25408827-25408863)
chr3 (100-188)||(36803163-36803251)
chr3 (129-185)||(33692909-33692965)
chr3 (16-48)||(43149226-43149258)
chr3 (94-182)||(45966984-45967072)
[»] chr6 (14 HSPs)
chr6 (81-241)||(11298545-11298705)
chr6 (89-241)||(29321277-29321429)
chr6 (80-198)||(32533060-32533178)
chr6 (94-203)||(15117242-15117351)
chr6 (80-209)||(18672020-18672148)
chr6 (89-201)||(18015738-18015850)
chr6 (98-188)||(11324470-11324560)
chr6 (94-195)||(18673363-18673464)
chr6 (92-195)||(5667364-5667467)
chr6 (91-188)||(2682758-2682855)
chr6 (152-191)||(22469479-22469518)
chr6 (152-193)||(17292767-17292808)
chr6 (152-188)||(10944170-10944206)
chr6 (160-188)||(31454046-31454074)
[»] chr1 (17 HSPs)
chr1 (81-235)||(28442103-28442258)
chr1 (82-222)||(28400482-28400622)
chr1 (84-209)||(5411728-5411853)
chr1 (89-203)||(12688172-12688286)
chr1 (80-208)||(45718318-45718445)
chr1 (89-201)||(48973645-48973757)
chr1 (129-194)||(26260785-26260850)
chr1 (92-194)||(23997109-23997211)
chr1 (152-194)||(52626563-52626605)
chr1 (123-194)||(5958326-5958397)
chr1 (94-188)||(6723717-6723811)
chr1 (148-194)||(8527072-8527118)
chr1 (129-187)||(9484879-9484937)
chr1 (94-194)||(16909036-16909136)
chr1 (129-193)||(44675129-44675193)
chr1 (98-194)||(17128488-17128584)
chr1 (94-182)||(34703494-34703582)
[»] chr4 (19 HSPs)
chr4 (92-241)||(11131140-11131289)
chr4 (89-209)||(54870803-54870923)
chr4 (80-209)||(10552623-10552752)
chr4 (94-213)||(18921911-18922030)
chr4 (94-213)||(30739500-30739619)
chr4 (80-188)||(37207401-37207509)
chr4 (99-209)||(13137084-13137194)
chr4 (129-186)||(52578018-52578075)
chr4 (98-184)||(40153935-40154021)
chr4 (83-188)||(9831372-9831477)
chr4 (95-194)||(12114995-12115094)
chr4 (129-188)||(20510427-20510486)
chr4 (154-191)||(27270009-27270046)
chr4 (108-191)||(53650436-53650519)
chr4 (148-194)||(13608948-13608994)
chr4 (95-201)||(42527335-42527441)
chr4 (154-191)||(21204901-21204938)
chr4 (129-193)||(25130442-25130506)
chr4 (152-188)||(37772969-37773005)
[»] chr8 (12 HSPs)
chr8 (97-209)||(7179015-7179127)
chr8 (94-222)||(16489432-16489560)
chr8 (95-213)||(38233202-38233320)
chr8 (94-203)||(38685759-38685868)
chr8 (83-202)||(33191195-33191313)
chr8 (94-188)||(37929106-37929200)
chr8 (89-188)||(41255043-41255142)
chr8 (129-187)||(8462520-8462578)
chr8 (129-186)||(10616938-10616995)
chr8 (161-226)||(39896243-39896308)
chr8 (15-43)||(33511756-33511784)
chr8 (147-195)||(38738477-38738525)
[»] chr7 (14 HSPs)
chr7 (83-207)||(38342952-38343076)
chr7 (87-222)||(34871558-34871693)
chr7 (80-209)||(40616719-40616848)
chr7 (80-185)||(27854867-27854972)
chr7 (89-203)||(11884360-11884467)
chr7 (94-214)||(8566752-8566872)
chr7 (178-241)||(3535817-3535880)
chr7 (15-67)||(41877983-41878039)
chr7 (94-187)||(38153904-38153997)
chr7 (89-194)||(47543420-47543525)
chr7 (148-194)||(9628252-9628298)
chr7 (129-195)||(12092710-12092776)
chr7 (153-195)||(35516750-35516792)
chr7 (155-188)||(34237214-34237247)
[»] chr2 (11 HSPs)
chr2 (80-203)||(40426917-40427040)
chr2 (80-209)||(841533-841662)
chr2 (94-213)||(1997678-1997797)
chr2 (81-209)||(24739803-24739931)
chr2 (94-187)||(44735982-44736075)
chr2 (152-194)||(45131126-45131168)
chr2 (152-194)||(8090525-8090567)
chr2 (152-194)||(27009255-27009297)
chr2 (97-194)||(38408989-38409086)
chr2 (17-50)||(43621993-43622026)
chr2 (94-194)||(40638803-40638903)
[»] chr5 (19 HSPs)
chr5 (89-203)||(21041943-21042057)
chr5 (95-213)||(7465223-7465341)
chr5 (89-209)||(7961129-7961249)
chr5 (80-220)||(32017958-32018098)
chr5 (127-194)||(16610600-16610667)
chr5 (92-188)||(12831519-12831615)
chr5 (119-195)||(29994642-29994718)
chr5 (148-195)||(8006827-8006874)
chr5 (129-188)||(12863494-12863553)
chr5 (129-194)||(26778719-26778784)
chr5 (128-188)||(27482677-27482737)
chr5 (152-188)||(39839961-39839997)
chr5 (94-145)||(12564942-12564993)
chr5 (119-194)||(27843491-27843566)
chr5 (151-194)||(32252175-32252218)
chr5 (128-186)||(25326156-25326214)
chr5 (89-194)||(31706425-31706530)
chr5 (16-44)||(14716112-14716140)
chr5 (129-193)||(18967887-18967951)
[»] scaffold0225 (1 HSPs)
scaffold0225 (80-209)||(6490-6619)
[»] scaffold0795 (1 HSPs)
scaffold0795 (95-194)||(2158-2257)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 81 - 241
Target Start/End: Complemental strand, 29542500 - 29542340
Alignment:
Q  81 tagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtgg 180  Q
    ||||||| |||||||||||||||||| |||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29542500 tagctctattatacaggtggtggacatgattaacttgctaactttccagtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtgg 29542401  T
Q  181 cttagtccatttactttactaggaataggttaacgggtgtttggtggtaagctgttctgtg 241  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||    
T  29542400 cttagtccatttactttactaggaattggttaacgggtgtttggtgttaagctgttttgtg 29542340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 41878686 - 41878834
Alignment:
Q  89 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    ||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41878686 ttatacaagtggtggacaggattaagttgctaactttccagtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtcc 41878785  T
Q  189 atttactttactaggaataggttaacgggtg--tttggtggtaagctgt 235  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  41878786 atttactttactaggaataggttaacgggtgtttttggtggtaagctgt 41878834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 82 - 235
Target Start/End: Original strand, 22533989 - 22534145
Alignment:
Q  82 agctcttttatacaggtggtggacaggattaag-ttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtgg 180  Q
    |||||| |||||||||||||||| ||||||||| ||| ||||||| | |||||||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  22533989 agctctattatacaggtggtggataggattaaggttgttaactttccagtggttgaaggtgaagtttgtcactcttccttttaactatcatgggtggtgg 22534088  T
Q  181 cttagtccatttactttactaggaataggttaacgggtgt--ttggtggtaagctgt 235  Q
    |||||||||||||||||||| |||||||||||| || |||  |||||||||||||||    
T  22534089 cttagtccatttactttacttggaataggttaatggttgttcttggtggtaagctgt 22534145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 42806401 - 42806261
Alignment:
Q  82 agctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggc 181  Q
    |||||| ||| |||||||||||| |||||||||||| ||||||| | |||||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  42806401 agctctattaaacaggtggtggataggattaagttgttaactttcctgtggttgaaggtgaagtttgtcactcttccttttaactatcatgggtggtggc 42806302  T
Q  182 ttagtccatttactttactaggaataggttaacgggtgttt 222  Q
    |||||||||| |||||||| || ||||| ||| || |||||    
T  42806301 ttagtccattcactttacttggcataggataatggttgttt 42806261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 94 - 241
Target Start/End: Complemental strand, 19979378 - 19979231
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 193  Q
    ||||||||||||| ||||||| || |||||||   ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  19979378 caggtggtggacatgattaagctgttaactttcaagtggttgaaggtgaagtttgtaactcttccctttaactatcatggttggtggcttagcccattta 19979279  T
Q  194 ctttactaggaataggttaacgggtgtttggtggtaagctgttctgtg 241  Q
    ||||||||| |||||| ||| || |||| |||| | ||||||| ||||    
T  19979278 ctttactagaaataggctaatggttgttcggtgctgagctgttttgtg 19979231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 53876986 - 53876866
Alignment:
Q  89 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    ||||||||||||||||||  ||||||||| | |||||   |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  53876986 ttatacaggtggtggacaaaattaagttgttgactttcaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttggtcc 53876887  T
Q  189 atttactttactaggaatagg 209  Q
     |||||||||||||| |||||    
T  53876886 gtttactttactaggcatagg 53876866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 6925945 - 6926059
Alignment:
Q  89 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    ||||||||||||||||||  ||||||||| | ||||    |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  6925945 ttatacaggtggtggacaaaattaagttgttgacttacaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtcc 6926044  T
Q  189 atttactttactagg 203  Q
     ||||| ||||||||    
T  6926045 gtttacattactagg 6926059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 37537328 - 37537238
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggctta 184  Q
    ||||||||||||| ||||||| |  |||| ||| ||||||||||||||||||| |   |||||||||||| ||||||||||||||||||||    
T  37537328 caggtggtggacaagattaaggttgtaacctttaggtggttgaaggtgaagttcgcttctcttccctttacttatcatggttggtggctta 37537238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 6894190 - 6894311
Alignment:
Q  92 tacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatt 191  Q
    |||||||||| || ||||||||||| || |||||    |||||||||| || |||| | ||||||||||| |||||||||||||||||| ||||||| ||    
T  6894190 tacaggtggtcgataggattaagttactgactttcaaatggttgaaggcgaggtttataactcttcccttcaattatcatggttggtggattagtccgtt 6894289  T
Q  192 tactttactaggaataggttaa 213  Q
    |||| |  |||| |||||||||    
T  6894290 tactattttaggcataggttaa 6894311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 47160990 - 47161078
Alignment:
Q  97 gtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttag 185  Q
    |||||||| |||||||||||| ||||||||  |||||||||||||||||||    ||||||| || ||||| |||||||||||||||||    
T  47160990 gtggtggataggattaagttgttaacttttaagtggttgaaggtgaagtttccttctcttccattcaattaccatggttggtggcttag 47161078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 25408827 - 25408863
Alignment:
Q  158 cctttaattatcatggttggtggcttagtccatttac 194  Q
    |||| ||||||||||||||||||||||||||||||||    
T  25408827 ccttcaattatcatggttggtggcttagtccatttac 25408863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 36803163 - 36803251
Alignment:
Q  100 gtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    ||||||| |||||| | ||| ||||||  ||||||||||| |||||||  |||| |||| || |||| ||||| |||||||||||||||    
T  36803163 gtggacaagattaaatcgcttacttttatgtggttgaaggcgaagtttaccactattcctttcaattttcatgcttggtggcttagtcc 36803251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 33692965 - 33692909
Alignment:
Q  129 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttag 185  Q
    ||||||||||||||| |||  ||| |||||||| || | ||||||||||||||||||    
T  33692965 gtggttgaaggtgaaatttaacacgcttcccttcaactttcatggttggtggcttag 33692909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 43149258 - 43149226
Alignment:
Q  16 caaaatagttgtacaaatatcattactcaaaaa 48  Q
    |||||||||||| ||||||||||||||||||||    
T  43149258 caaaatagttgttcaaatatcattactcaaaaa 43149226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 45967072 - 45966984
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggct 182  Q
    ||||||||||||| |||||||  | |||| ||| ||||||||||||||| | | |   ||||||| || || |||||||||||||||||    
T  45967072 caggtggtggacaagattaaggcggtaacctttaggtggttgaaggtgaggatcgcttctcttcctttcaactatcatggttggtggct 45966984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 81 - 241
Target Start/End: Complemental strand, 11298705 - 11298545
Alignment:
Q  81 tagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtgg 180  Q
    ||||||| |||| || || ||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11298705 tagctctattatgcatgtagtggacatgattaagttgttaacttttcagtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtgg 11298606  T
Q  181 cttagtccatttactttactaggaataggttaacgggtgtttggtggtaagctgttctgtg 241  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| ||||    
T  11298605 cttagtccatttactttactaggaataggctaacggttgtttggtgctaagctgttttgtg 11298545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 89 - 241
Target Start/End: Complemental strand, 29321429 - 29321277
Alignment:
Q  89 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    |||| |||||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  29321429 ttatgcaggtggtggacaggattaagttgttaactttccagtggttgaaagtgaagtttgtcactcttccctttaactatgatggttggtggcttagtcc 29321330  T
Q  189 atttactttactaggaataggttaacgggtgtttggtggtaagctgttctgtg 241  Q
    ||||||||||||||||||||| |||||| ||||||||| ||||||||| ||||    
T  29321329 atttactttactaggaataggctaacggttgtttggtgctaagctgttttgtg 29321277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 32533178 - 32533060
Alignment:
Q  80 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 179  Q
    |||||||| ||||  |||||||||| |||||||||||| |||| ||   |||||||||| |||||||||  |||||||||||||| ||||||||||||||    
T  32533178 atagctctattatgtaggtggtggataggattaagttgttaacattcaagtggttgaagatgaagtttgctactcttccctttaactatcatggttggtg 32533079  T
Q  180 gcttagtccatttacttta 198  Q
    ||||||||| || ||||||    
T  32533078 gcttagtccgttcacttta 32533060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 15117351 - 15117242
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 193  Q
    ||||||||||||| ||||||| ||||||||| |  ||||||||||||||||| ||  ||||||||||||||||||||||||||||||  |||||| || |    
T  15117351 caggtggtggacatgattaagctgctaacttataagtggttgaaggtgaagtatgctactcttccctttaattatcatggttggtggagtagtcctttca 15117252  T
Q  194 ctttactagg 203  Q
    ||||| ||||    
T  15117251 ctttattagg 15117242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 209
Target Start/End: Original strand, 18672020 - 18672148
Alignment:
Q  80 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 179  Q
    |||||||  |||| |||| |||||||| ||||||||||||||||| |  ||||||||||||||||| | | |||||||||||||| ||||||||||||||    
T  18672020 atagctcaattattcagggggtggacaagattaagttgctaacttataagtggttgaaggtgaagtatct-actcttccctttaactatcatggttggtg 18672118  T
Q  180 gcttagtccatttactttactaggaatagg 209  Q
    ||| ||||| || || |||||||| |||||    
T  18672119 gctgagtccgttcaccttactaggcatagg 18672148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 89 - 201
Target Start/End: Complemental strand, 18015850 - 18015738
Alignment:
Q  89 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    |||| ||||||||||| |||||||||||| |||| |||  |||||||  ||||||||||   |||||||||||||| ||||||||||||||||||| |||    
T  18015850 ttatgcaggtggtggataggattaagttgttaacgtttaagtggttgggggtgaagtttacaactcttccctttaactatcatggttggtggcttactcc 18015751  T
Q  189 atttactttacta 201  Q
     ||||||||||||    
T  18015750 gtttactttacta 18015738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 11324470 - 11324560
Alignment:
Q  98 tggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    |||| |||| ||||||||||||  |||||  ||||||||||| ||| ||||   |||||||||| ||||||||||| ||||||||||||||    
T  11324470 tggtagacaagattaagttgcttgcttttacgtggttgaaggcgaaatttgcttctcttcccttcaattatcatgggtggtggcttagtcc 11324560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 18673363 - 18673464
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 193  Q
    ||||||||||| |  |||||||  || ||||||  ||||||||||| ||| | ||||| ||||||| | ||||||||||||||||||||||| || ||||    
T  18673363 caggtggtggataaaattaagtctcttacttttatgtggttgaaggagaaatatgtcagtcttcccctcaattatcatggttggtggcttagcccgttta 18673462  T
Q  194 ct 195  Q
    ||    
T  18673463 ct 18673464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 195
Target Start/End: Complemental strand, 5667467 - 5667364
Alignment:
Q  92 tacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatt 191  Q
    |||||||||| || ||||||||||| || |||||    |||||||||  || |||| | |||||| |||| |||||||||||||||||| ||||||| ||    
T  5667467 tacaggtggtcgataggattaagttactgactttcaaatggttgaagacgaggtttataactctttccttcaattatcatggttggtggattagtccgtt 5667368  T
Q  192 tact 195  Q
    ||||    
T  5667367 tact 5667364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 2682758 - 2682855
Alignment:
Q  91 atacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    |||||||| || |||| ||||||||  ||  ||||| |||||||||||||||| |||   ||| ||| ||| |||| |||||||||||||||||||||    
T  2682758 atacaggttgtcgacaagattaagtcccttgcttttaggtggttgaaggtgaaatttcctactattctcttcaattgtcatggttggtggcttagtcc 2682855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 191
Target Start/End: Original strand, 22469479 - 22469518
Alignment:
Q  152 ctcttccctttaattatcatggttggtggcttagtccatt 191  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  22469479 ctcttcccttcaattatcatgcttggtggcttagtccatt 22469518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 17292808 - 17292767
Alignment:
Q  152 ctcttccctttaattatcatggttggtggcttagtccattta 193  Q
    |||||||||| |||||||||||||| ||||||||||| ||||    
T  17292808 ctcttcccttcaattatcatggttgatggcttagtccgttta 17292767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 10944170 - 10944206
Alignment:
Q  152 ctcttccctttaattatcatggttggtggcttagtcc 188  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  10944170 ctcttccctttaattaccatggtttgtggcttagtcc 10944206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 31454074 - 31454046
Alignment:
Q  160 tttaattatcatggttggtggcttagtcc 188  Q
    |||||||||||||||||||||||||||||    
T  31454074 tttaattatcatggttggtggcttagtcc 31454046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 81 - 235
Target Start/End: Complemental strand, 28442258 - 28442103
Alignment:
Q  81 tagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtgg 180  Q
    ||||||| ||||||| ||||||||||  ||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  28442258 tagctctattatacacgtggtggacaacattaagttgctaactttccagtggttgaaggtgaagtttgtctctcttccctttaactatcatggttggtgg 28442159  T
Q  181 cttagtccatttactttactaggaataggttaacgggtg-tttggtggtaagctgt 235  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  28442158 cttagtccatttactttattaggaataggttaacgggtgttttggtggtaagctgt 28442103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 82 - 222
Target Start/End: Original strand, 28400482 - 28400622
Alignment:
Q  82 agctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggc 181  Q
    |||||| ||| |||||||||||| |||||||||||| ||||||| | |||| ||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  28400482 agctctattaaacaggtggtggataggattaagttgttaactttccagtggatgaaggtgaagtttgtcactcttccttttaactatcatgggtggtggc 28400581  T
Q  182 ttagtccatttactttactaggaataggttaacgggtgttt 222  Q
    |||||||||| |||||||| || ||||| ||| || |||||    
T  28400582 ttagtccattcactttacttggcataggataatggttgttt 28400622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 84 - 209
Target Start/End: Original strand, 5411728 - 5411853
Alignment:
Q  84 ctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggctt 183  Q
    |||| |||| || ||||||||||||||||||||| ||| |||   ||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||    
T  5411728 ctctattatgcaagtggtggacaggattaagttgttaaatttcaagtggttgaaggtgaagtttgtaactcttccctttaactatcatggttgttggctt 5411827  T
Q  184 agtccatttactttactaggaatagg 209  Q
    ||||| |||||||||||| |||||||    
T  5411828 agtccgtttactttactaagaatagg 5411853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 12688172 - 12688286
Alignment:
Q  89 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    |||| ||||||||||| | |||||||||||||||||||  |||||||||||||||||||   |||||||||||||| |||||||| ||||||||||||||    
T  12688172 ttatgcaggtggtggataagattaagttgctaacttttaagtggttgaaggtgaagtttccaactcttccctttaactatcatggatggtggcttagtcc 12688271  T
Q  189 atttactttactagg 203  Q
     ||||||||||||||    
T  12688272 gtttactttactagg 12688286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 80 - 208
Target Start/End: Original strand, 45718318 - 45718445
Alignment:
Q  80 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 179  Q
    |||||||  |||| ||||||||||||| |||||||||| |||||||   |||| ||||| |||| |||| ||||||||||||||||||||||||||||||    
T  45718318 atagctcaattatgcaggtggtggacaagattaagttgttaactttgaagtggctgaagatgaaatttgccactcttccctttaattatcatggttggtg 45718417  T
Q  180 gcttagtccatttactttactaggaatag 208  Q
    |||||| || |||||||||||||| ||||    
T  45718418 gcttag-ccgtttactttactaggcatag 45718445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 201
Target Start/End: Original strand, 48973645 - 48973757
Alignment:
Q  89 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    ||||||||||||||||||  ||||||||| | |||||   |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  48973645 ttatacaggtggtggacaaaattaagttgttgactttcaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtcc 48973744  T
Q  189 atttactttacta 201  Q
     ||||| ||||||    
T  48973745 gtttacattacta 48973757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 26260785 - 26260850
Alignment:
Q  129 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    ||||||||||| ||||||||   |||||||||| ||||||||||| ||||||||||||||||||||    
T  26260785 gtggttgaaggcgaagtttgcttctcttcccttcaattatcatgggtggtggcttagtccatttac 26260850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 23997109 - 23997211
Alignment:
Q  92 tacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatt 191  Q
    ||||||||||||||| ||||||||   | || ||| ||||||||||||||||  | ||  ||||| |||||||||||||||| || ||||||||||| ||    
T  23997109 tacaggtggtggacaagattaagtcagttacctttaggtggttgaaggtgaaactcgtttctctttcctttaattatcatggctgatggcttagtccttt 23997208  T
Q  192 tac 194  Q
    |||    
T  23997209 tac 23997211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 52626563 - 52626605
Alignment:
Q  152 ctcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  52626563 ctcttcccttcaattatcatggttggtggcttagtccatttac 52626605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 5958397 - 5958326
Alignment:
Q  123 ttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    |||| |||||||||||||||| ||||  ||| |||||||||| |||||||| |||||||||| | |||||||    
T  5958397 ttttaggtggttgaaggtgaaatttgctacttttccctttaactatcatggatggtggcttaattcatttac 5958326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 6723811 - 6723717
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    |||||||| |||| ||||||||  || ||||||  |||||||||||||||||||   |||| ||| || |||| |||||| ||||||||||||||    
T  6723811 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcctcctttcaattttcatggatggtggcttagtcc 6723717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 8527072 - 8527118
Alignment:
Q  148 gtcactcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||||||    
T  8527072 gtcaatcttcccttcaattatcatggttggtgacttagtccatttac 8527118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 9484879 - 9484937
Alignment:
Q  129 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtc 187  Q
    ||||||||||| ||| |||||  |||||||||| |||||||||||||||||| ||||||    
T  9484879 gtggttgaaggcgaaatttgtttctcttcccttcaattatcatggttggtggtttagtc 9484937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 16909136 - 16909036
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 193  Q
    |||||||||||||   ||||||  ||||||||   ||||||||||| ||| || |||| |||  || | |||||||||||||||||||||||||| ||||    
T  16909136 caggtggtggacaaagttaagtctctaactttgatgtggttgaaggggaaattcgtcagtctctccctcaattatcatggttggtggcttagtccgttta 16909037  T
Q  194 c 194  Q
    |    
T  16909036 c 16909036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 44675129 - 44675193
Alignment:
Q  129 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 193  Q
    ||||||||||| ||| ||||   | |||||||| |||||||||||||||||||||||||| ||||    
T  44675129 gtggttgaaggcgaaatttgcttcccttcccttcaattatcatggttggtggcttagtccgttta 44675193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 194
Target Start/End: Original strand, 17128488 - 17128584
Alignment:
Q  98 tggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    |||| |||| |||||||| | |||||||   |||| |||||| ||| |  |||| ||||||||| ||||| ||| |||||||||||||||| |||||    
T  17128488 tggttgacaagattaagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccattgttggtggcttagtccttttac 17128584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 34703582 - 34703494
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggct 182  Q
    |||||||| || | ||||||||  || ||||||  ||||||||||| ||| | ||  |||||||||||||| | |||||||||||||||    
T  34703582 caggtggttgataagattaagtccctcacttttatgtggttgaaggcgaaatatgcaactcttccctttaactttcatggttggtggct 34703494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 92 - 241
Target Start/End: Complemental strand, 11131289 - 11131140
Alignment:
Q  92 tacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatt 191  Q
    |||||||||| || ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11131289 tacaggtggtagataggattaagttgctatcttttcagtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccttt 11131190  T
Q  192 tactttactaggaataggttaacgggtgtttggtggtaagctgttctgtg 241  Q
    ||||||| ||||||||||||||| ||||  ||| | ||||||||| ||||    
T  11131189 tactttattaggaataggttaaccggtggctggagttaagctgttttgtg 11131140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 54870923 - 54870803
Alignment:
Q  89 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    |||||||||||||||||| |||||| ||| | |||||   |||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  54870923 ttatacaggtggtggacaagattaaattgttgactttcaagtggttaaatgtgaagtttgtaactcttccctttaattatcatggttggtggcttagtcc 54870824  T
Q  189 atttactttactaggaatagg 209  Q
     |||||||||||||| |||||    
T  54870823 gtttactttactaggcatagg 54870803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 209
Target Start/End: Original strand, 10552623 - 10552752
Alignment:
Q  80 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 179  Q
    |||||||| |||| ||||||||||| |||||||||||| |||| ||   ||||||||||||||||| ||  |||||||||||||| ||||||||||||||    
T  10552623 atagctctattatgcaggtggtggataggattaagttgttaacattcaagtggttgaaggtgaagtatgctactcttccctttaactatcatggttggtg 10552722  T
Q  180 gcttagtccatttactttactaggaatagg 209  Q
    ||||||||| || |||||| |||| |||||    
T  10552723 gcttagtccgttcactttagtaggcatagg 10552752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 213
Target Start/End: Original strand, 18921911 - 18922030
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 193  Q
    ||||||||||||||||||||| ||||||||| |  ||||||||||||||||| ||   ||||||||||||||||||||||||||| |  |||||| || |    
T  18921911 caggtggtggacaggattaagctgctaacttataagtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggttgactagtcctttca 18922010  T
Q  194 ctttactaggaataggttaa 213  Q
    ||||| |||| |||||||||    
T  18922011 ctttattaggcataggttaa 18922030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 213
Target Start/End: Complemental strand, 30739619 - 30739500
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 193  Q
    ||||||||||||| ||||||| ||||||||| |  ||||||||||||||||| ||   |||||||||||||||||||||||||||||  |||||| || |    
T  30739619 caggtggtggacatgattaagctgctaacttataagtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggaatagtcctttca 30739520  T
Q  194 ctttactaggaataggttaa 213  Q
    ||||| |||| |||||||||    
T  30739519 ctttattaggcataggttaa 30739500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 37207509 - 37207401
Alignment:
Q  80 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 179  Q
    ||||| || |||| || |||||||| ||||||||||||||||||||    ||||| |||||||||||| | |||||||||||||||||||||||||| ||    
T  37207509 atagcactattattcaagtggtggataggattaagttgctaactttcaattggttaaaggtgaagtttataactcttccctttaattatcatggttgatg 37207410  T
Q  180 gcttagtcc 188  Q
    ||| |||||    
T  37207409 gctaagtcc 37207401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 209
Target Start/End: Original strand, 13137084 - 13137194
Alignment:
Q  99 ggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttacttta 198  Q
    |||||||| |||||||| | ||||||   |||||||||||||||| ||||  ||||||  ||| |||||||||||||||||||||||||| ||||| |||    
T  13137084 ggtggacaagattaagtcgttaacttacaggtggttgaaggtgaaatttgctactcttttcttcaattatcatggttggtggcttagtccgtttacctta 13137183  T
Q  199 ctaggaatagg 209  Q
    ||||| |||||    
T  13137184 ctaggcatagg 13137194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 52578018 - 52578075
Alignment:
Q  129 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagt 186  Q
    |||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  52578018 gtggttgaaggtgaagtttgtatctcttcccttcaattatcatggttggtggcttagt 52578075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 40154021 - 40153935
Alignment:
Q  98 tggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggctta 184  Q
    ||||||||| |||||||| | ||||||   |||||||||||||||| ||||  | |||||||||||| |||||| ||||||||||||    
T  40154021 tggtggacaagattaagtcggtaacttacaggtggttgaaggtgaaatttgctaatcttccctttaactatcatagttggtggctta 40153935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 9831372 - 9831477
Alignment:
Q  83 gctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggct 182  Q
    ||||| |||| ||||||||||| | ||| ||||  ||  ||||| |||||||||||| ||| || || || |||||||| ||||||||||| ||||||||    
T  9831372 gctctgttattcaggtggtggataagatcaagtctcttgcttttaggtggttgaaggcgaaattcgttacacttcccttcaattatcatggctggtggct 9831471  T
Q  183 tagtcc 188  Q
    ||||||    
T  9831472 tagtcc 9831477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 12114995 - 12115094
Alignment:
Q  95 aggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    |||||||||||| ||| ||||   |||| ||| ||||||||||||||||  | || | ||||||||| ||||||||||||| |||||| ||||| |||||    
T  12114995 aggtggtggacaagatcaagtcagtaacctttaggtggttgaaggtgaaactcgttattcttcccttcaattatcatggtttgtggctcagtccgtttac 12115094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 20510427 - 20510486
Alignment:
Q  129 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    ||||||||||||||| |||  ||| |||||||| |||| |||||||||||||||||||||    
T  20510427 gtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtcc 20510486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 27270046 - 27270009
Alignment:
Q  154 cttccctttaattatcatggttggtggcttagtccatt 191  Q
    |||||||| |||||||||||||||||||||||||||||    
T  27270046 cttcccttcaattatcatggttggtggcttagtccatt 27270009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 191
Target Start/End: Complemental strand, 53650519 - 53650436
Alignment:
Q  108 gattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatt 191  Q
    |||||||| ||||||||||  ||||||||||| |||||||   || ||||| || ||||| |||| ||| ||||||||||||||    
T  53650519 gattaagtcgctaacttttatgtggttgaaggcgaagtttactacccttcctttcaattaccatgcttgatggcttagtccatt 53650436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 13608994 - 13608948
Alignment:
Q  148 gtcactcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    |||| ||||||||| ||||| |||||||||||||||||||| |||||    
T  13608994 gtcaatcttcccttcaattaccatggttggtggcttagtccgtttac 13608948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 201
Target Start/End: Complemental strand, 42527441 - 42527335
Alignment:
Q  95 aggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    |||||| ||||| |||||||||| |||| |    ||||||||||||||| |||   |||||||| |  |||||||||||||||||||||| ||| || ||    
T  42527441 aggtggcggacatgattaagttgttaacctacaagtggttgaaggtgaaattttctactcttccttccaattatcatggttggtggcttaatccgttcac 42527342  T
Q  195 tttacta 201  Q
     ||||||    
T  42527341 attacta 42527335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 21204938 - 21204901
Alignment:
Q  154 cttccctttaattatcatggttggtggcttagtccatt 191  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  21204938 cttcccttcaattatcatggttggtggcttagttcatt 21204901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 25130506 - 25130442
Alignment:
Q  129 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 193  Q
    ||||||||||| ||| ||||  |||||| || | || ||||||||||||||||||||||| ||||    
T  25130506 gtggttgaaggagaaatttgctactctttccctcaactatcatggttggtggcttagtccgttta 25130442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 37772969 - 37773005
Alignment:
Q  152 ctcttccctttaattatcatggttggtggcttagtcc 188  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  37772969 ctcttcccttcaattaccatggttggtggcttagtcc 37773005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 209
Target Start/End: Complemental strand, 7179127 - 7179015
Alignment:
Q  97 gtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttactt 196  Q
    ||||||||||  ||||||||| |||||||   ||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| ||||||    
T  7179127 gtggtggacataattaagttgttaactttcaagtggttgaaggtgaagtttgtaactcttccctttaactatcatgattggtggcttagtccaattactt 7179028  T
Q  197 tactaggaatagg 209  Q
    |||||||||||||    
T  7179027 tactaggaatagg 7179015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 222
Target Start/End: Complemental strand, 16489560 - 16489432
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 193  Q
    ||||||||||| |||||||||||| ||||||| | |||||||||||||||||||||   |||||  ||||| |||||| | ||||||||||||||||| |    
T  16489560 caggtggtggataggattaagttgttaactttccagtggttgaaggtgaagtttgttcatcttctttttaactatcataggtggtggcttagtccattca 16489461  T
Q  194 ctttactaggaataggttaacgggtgttt 222  Q
    ||||||| || |||||||||||| |||||    
T  16489460 ctttacttggcataggttaacggttgttt 16489432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 38233202 - 38233320
Alignment:
Q  95 aggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    |||||||||||| ||||||| ||||||||| |  ||||||||||||||||| ||   |||||||||||||||||||||||||||||  |||||| || ||    
T  38233202 aggtggtggacaagattaagctgctaacttataagtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggtctagtcctttcac 38233301  T
Q  195 tttactaggaataggttaa 213  Q
    |||| |||| |||||||||    
T  38233302 tttattaggcataggttaa 38233320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 38685759 - 38685868
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 193  Q
    ||||||||||||| ||||||||||||||||| |  ||||| ||||||||||| ||  |||||||||||||| ||||||||||||||| ||||||| || |    
T  38685759 caggtggtggacatgattaagttgctaacttataagtggtcgaaggtgaagtatgctactcttccctttaactatcatggttggtggattagtccgttca 38685858  T
Q  194 ctttactagg 203  Q
    ||||| ||||    
T  38685859 ctttattagg 38685868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 202
Target Start/End: Complemental strand, 33191313 - 33191195
Alignment:
Q  83 gctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggct 182  Q
    ||||| |||| || ||||||||||| ||||||||| |||| |    |||||||||| |||| ||||  ||||||||||| ||||||||||||||||||||    
T  33191313 gctctattatgcacgtggtggacag-attaagttgttaacatacacgtggttgaagttgaaatttgatactcttcccttcaattatcatggttggtggct 33191215  T
Q  183 tagtccatttactttactag 202  Q
    |||||| || |||| |||||    
T  33191214 tagtccgttcacttaactag 33191195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 188
Target Start/End: Original strand, 37929106 - 37929200
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    |||||||| || ||||||||||  ||  | ||| |||||||||||||||| |||   |||||||||||||| |||||||||||||||||||||||    
T  37929106 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtcc 37929200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 41255142 - 41255043
Alignment:
Q  89 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    |||| |||||||||||  |||||||||| ||||| ||   |||||||||||| || | ||    |||||||||||| |||||||||||||||||||||||    
T  41255142 ttatgcaggtggtggatcggattaagttactaacattcaagtggttgaaggttaactatgcttatcttccctttaactatcatggttggtggcttagtcc 41255043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 8462578 - 8462520
Alignment:
Q  129 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtc 187  Q
    ||||||||||| ||| ||||   |||||||||| |||||||||||||||||||||||||    
T  8462578 gtggttgaaggcgaaatttgcttctcttcccttcaattatcatggttggtggcttagtc 8462520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 10616938 - 10616995
Alignment:
Q  129 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagt 186  Q
    ||||||| ||||||||||||  ||| |||| || || |||||||||||||||||||||    
T  10616938 gtggttggaggtgaagtttgctactattcctttcaactatcatggttggtggcttagt 10616995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 39896308 - 39896243
Alignment:
Q  161 ttaattatcatggttggtggcttagtccatttactttactaggaataggttaacgggtgtttggtg 226  Q
    |||| ||| |||| |||||||||||||| |||||||||||||| ||||| ||| ||  ||||||||    
T  39896308 ttaaatattatgggtggtggcttagtccgtttactttactaggcataggctaaaggcagtttggtg 39896243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 33511756 - 33511784
Alignment:
Q  15 acaaaatagttgtacaaatatcattactc 43  Q
    |||||||||||||||||||||||||||||    
T  33511756 acaaaatagttgtacaaatatcattactc 33511784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 38738477 - 38738525
Alignment:
Q  147 tgtcactcttccctttaattatcatggttggtggcttagtccatttact 195  Q
    ||||| ||||||| | ||||||||||||||||||||||| || ||||||    
T  38738477 tgtcagtcttcccctcaattatcatggttggtggcttagcccgtttact 38738525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 38342952 - 38343076
Alignment:
Q  83 gctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggct 182  Q
    ||||| |||| || ||||||||||||||||||||| |||||||   |||||||||||||||| |||| |||||||||||||| |||||||||||||| ||    
T  38342952 gctctattatgcaagtggtggacaggattaagttgttaactttcaagtggttgaaggtgaagcttgtaactcttccctttaactatcatggttggtgact 38343051  T
Q  183 tagtccatttactttactaggaata 207  Q
    || ||| ||||||||||||||||||    
T  38343052 taatccgtttactttactaggaata 38343076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 34871558 - 34871693
Alignment:
Q  87 ttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagt 186  Q
    ||||| |||||||||||| |||||||||||| ||||||| | |||||||||||||||||||||   |||||  ||||| |||||| | ||||||||||||    
T  34871558 ttttagacaggtggtggataggattaagttgttaactttccagtggttgaaggtgaagtttgttcatcttctttttaactatcataggtggtggcttagt 34871657  T
Q  187 ccatttactttactaggaataggttaacgggtgttt 222  Q
    ||||| |||||||| || |||||||||||| |||||    
T  34871658 ccattcactttacttggcataggttaacggttgttt 34871693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 80 - 209
Target Start/End: Complemental strand, 40616848 - 40616719
Alignment:
Q  80 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 179  Q
    |||||||| |||| ||||||||||| |||||||||||| |||  ||   ||||||||||||||||| ||  |||||||||||||| |||| |||||||||    
T  40616848 atagctctattatgcaggtggtggataggattaagttgttaaaattcaagtggttgaaggtgaagtatgctactcttccctttaactatcttggttggtg 40616749  T
Q  180 gcttagtccatttactttactaggaatagg 209  Q
    ||||||||| || ||||||||||| |||||    
T  40616748 gcttagtccgttcactttactaggcatagg 40616719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 27854867 - 27854972
Alignment:
Q  80 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 179  Q
    |||||||| |||| ||||||||||| |||||||||||| |||| ||   ||||||||||||||||| ||  || ||||||||||| ||||||||||||||    
T  27854867 atagctctattatgcaggtggtggataggattaagttgttaacattcaagtggttgaaggtgaagtatgctacccttccctttaactatcatggttggtg 27854966  T
Q  180 gcttag 185  Q
    ||||||    
T  27854967 gcttag 27854972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 11884360 - 11884467
Alignment:
Q  89 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||   ||||||  ||| || |||||       |||||||||||    
T  11884360 ttatacaggtggtggacaggattaagttgttaacttttaagtggttgaaggtgaagtttccaactcttatcttcaactatca-------tggcttagtcc 11884452  T
Q  189 atttactttactagg 203  Q
    |||||||||||||||    
T  11884453 atttactttactagg 11884467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 8566872 - 8566752
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 193  Q
    ||||||||||| |||||||||||||||||||| |  ||||| ||||||||||||  || |||||| ||||| ||| |||||||| |||| ||||| |||     
T  8566872 caggtggtggataggattaagttgctaactttccattggttaaaggtgaagttttccaatcttccttttaactataatggttggcggctaagtccgtttt 8566773  T
Q  194 ctttactaggaataggttaac 214  Q
    || | ||||| ||||| ||||    
T  8566772 ctattctaggcataggctaac 8566752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 3535817 - 3535880
Alignment:
Q  178 tggcttagtccatttactttactaggaataggttaacgggtgtttggtggtaagctgttctgtg 241  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||||| ||||||||| ||||    
T  3535817 tggcttagtccatttactttactatgaataggttaacaggtggttggtgttaagctgttttgtg 3535880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 41878039 - 41877983
Alignment:
Q  15 acaaaatagttgtacaaatatcattactcaaaa----atatggtctcttgtgctata 67  Q
    |||||||||||||||||||||||||||| ||||    ||||||||||||||||||||    
T  41878039 acaaaatagttgtacaaatatcattacttaaaaaaatatatggtctcttgtgctata 41877983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 38153904 - 38153997
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtc 187  Q
    |||||||| || ||||||||||  ||  ||||| |||||||||||||||| |||   |||||||||||||| || ||| | |||||||||||||    
T  38153904 caggtggtcgataggattaagtctctcgcttttaggtggttgaaggtgaaatttcctactcttccctttaactaccatagatggtggcttagtc 38153997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 47543420 - 47543525
Alignment:
Q  89 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    |||| |||||||| |||| |||||||| |||  |||||  ||||||||||  |||||||    |||||||||| ||||||||||| || |||||||||||    
T  47543420 ttatccaggtggtcgacaagattaagtcgcttgcttttacgtggttgaagacgaagtttagttctcttcccttcaattatcatgggtgatggcttagtcc 47543519  T
Q  189 atttac 194  Q
     |||||    
T  47543520 gtttac 47543525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 9628252 - 9628298
Alignment:
Q  148 gtcactcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    |||| ||||||||| ||||| |||||||||||||||||||| |||||    
T  9628252 gtcaatcttcccttcaattaccatggttggtggcttagtccgtttac 9628298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 12092710 - 12092776
Alignment:
Q  129 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttact 195  Q
    ||||||||||| ||| |||  | |||||||||| || |||||||| | |||||||||||||||||||    
T  12092710 gtggttgaaggcgaaattttcctctcttcccttaaactatcatggatagtggcttagtccatttact 12092776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 35516750 - 35516792
Alignment:
Q  153 tcttccctttaattatcatggttggtggcttagtccatttact 195  Q
    ||||||||| |||| | ||||||||||||||||||||||||||    
T  35516750 tcttcccttaaatttttatggttggtggcttagtccatttact 35516792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 34237214 - 34237247
Alignment:
Q  155 ttccctttaattatcatggttggtggcttagtcc 188  Q
    ||||||| ||||||||||||||||||||||||||    
T  34237214 ttcccttcaattatcatggttggtggcttagtcc 34237247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 40427040 - 40426917
Alignment:
Q  80 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 179  Q
    |||||||  |||| ||||||||||||||||||||||||||||||| |  || |||||| ||||||| ||| |||||||||||||| ||||||||||||||    
T  40427040 atagctcaattatgcaggtggtggacaggattaagttgctaacttgtaagtagttgaaagtgaagtatgttactcttccctttaactatcatggttggtg 40426941  T
Q  180 gcttagtccatttactttactagg 203  Q
    ||||| ||| || |||||||||||    
T  40426940 gcttaatccgttcactttactagg 40426917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 80 - 209
Target Start/End: Complemental strand, 841662 - 841533
Alignment:
Q  80 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 179  Q
    |||||||| |||| ||||||||||| |||||||||||| |||  ||   ||||||||||||||||| ||  |||||||||||||| ||||||||||||||    
T  841662 atagctctattatgcaggtggtggataggattaagttgttaatattcaagtggttgaaggtgaagtatgctactcttccctttaactatcatggttggtg 841563  T
Q  180 gcttagtccatttactttactaggaatagg 209  Q
    ||||||||  || ||||||||||| |||||    
T  841562 gcttagtctgttcactttactaggcatagg 841533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 213
Target Start/End: Complemental strand, 1997797 - 1997678
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 193  Q
    ||||||||||||| ||||||| ||||||||| |  ||||||||||||||||| ||   |||||||||||||||||||||||||||||  |||||| || |    
T  1997797 caggtggtggacatgattaagctgctaacttataagtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggaatagtcctttca 1997698  T
Q  194 ctttactaggaataggttaa 213  Q
    ||||| |||| |||||||||    
T  1997697 ctttattaggcataggttaa 1997678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 81 - 209
Target Start/End: Original strand, 24739803 - 24739931
Alignment:
Q  81 tagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtgg 180  Q
    ||||||| |||| ||||||||||| |||||||||||| |||| ||   ||||||||||||||||| ||  || ||||||||||| |||||||||||||||    
T  24739803 tagctctattatgcaggtggtggataggattaagttgttaacattcaagtggttgaaggtgaagtatgctacccttccctttaactatcatggttggtgg 24739902  T
Q  181 cttagtccatttactttactaggaatagg 209  Q
    |||||||| || ||| | ||||| |||||    
T  24739903 cttagtccgttcactattctaggcatagg 24739931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 187
Target Start/End: Complemental strand, 44736075 - 44735982
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtc 187  Q
    |||||||| |||| ||||||||  || ||||||  ||||||||||| |||||||   ||||||||||| |||| |||||||| |||||||||||    
T  44736075 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggcgaagtttaatactcttcccttcaattttcatggttagtggcttagtc 44735982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 45131168 - 45131126
Alignment:
Q  152 ctcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    |||||||||| ||||||||||| ||||||||||||||||||||    
T  45131168 ctcttcccttcaattatcatgggtggtggcttagtccatttac 45131126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 8090525 - 8090567
Alignment:
Q  152 ctcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    |||||||||| ||||||||||| |||||||||||||| |||||    
T  8090525 ctcttcccttcaattatcatgggtggtggcttagtccgtttac 8090567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 27009255 - 27009297
Alignment:
Q  152 ctcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    |||||||||| ||||| |||||||||||||||||||| |||||    
T  27009255 ctcttcccttcaattaccatggttggtggcttagtccgtttac 27009297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 38408989 - 38409086
Alignment:
Q  97 gtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    |||||||||| |||||||| | ||||||    || |||||||||||| || |  || |||||||| |||||||||||||||||| | ||||| |||||    
T  38408989 gtggtggacaagattaagtcgttaacttacatgtagttgaaggtgaaattcgctacacttcccttcaattatcatggttggtggttcagtccgtttac 38409086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 43621993 - 43622026
Alignment:
Q  17 aaaatagttgtacaaatatcattactcaaaaata 50  Q
    |||||||||||||||||||||||||||| |||||    
T  43621993 aaaatagttgtacaaatatcattactcataaata 43622026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 40638903 - 40638803
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 193  Q
    |||||||| |||| |||||| | ||| || |||  |||||||| | |||||| ||   |||||||||| ||||| ||||| |||||||||||||| ||||    
T  40638903 caggtggtcgacaagattaaatcgcttacctttacgtggttgatgttgaagtatgcttctcttcccttcaattaccatgggtggtggcttagtccgttta 40638804  T
Q  194 c 194  Q
    |    
T  40638803 c 40638803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 21041943 - 21042057
Alignment:
Q  89 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    ||||||||||||||||||  ||||||||| | |||||   ||||||  ||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  21041943 ttatacaggtggtggacaaaattaagttgttgactttcaagtggttataggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtcc 21042042  T
Q  189 atttactttactagg 203  Q
     ||||| ||||||||    
T  21042043 gtttacattactagg 21042057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 7465223 - 7465341
Alignment:
Q  95 aggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    |||||||||||| ||||||| ||||||||| |  ||||||||||||||||| ||   |||||||||||||||||||||||||||||  |||||| || ||    
T  7465223 aggtggtggacaagattaagctgctaacttataagtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggtctagtcctttcac 7465322  T
Q  195 tttactaggaataggttaa 213  Q
    |||| |||| |||||||||    
T  7465323 tttattaggcataggttaa 7465341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 7961249 - 7961129
Alignment:
Q  89 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    |||| ||||||||||| ||||||||||||||||| ||   ||||||||||| ||||| ||  |||||||  ||||| ||||||||||||||||||||| |    
T  7961249 ttatgcaggtggtggataggattaagttgctaacattcaagtggttgaaggcgaagtatgctactcttcattttaactatcatggttggtggcttagttc 7961150  T
Q  189 atttactttactaggaatagg 209  Q
     || ||||||||||| |||||    
T  7961149 gttcactttactaggcatagg 7961129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 220
Target Start/End: Complemental strand, 32018098 - 32017958
Alignment:
Q  80 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 179  Q
    ||||| || ||||| |||||||||| |||||||||||| |||||||   ||||||||||||| ||| ||  |  ||||||||||||||||||||||||||    
T  32018098 atagccctattatagaggtggtggataggattaagttgttaactttcaagtggttgaaggtgcagtatgctaaccttccctttaattatcatggttggtg 32017999  T
Q  180 gcttagtccatttactttactaggaataggttaacgggtgt 220  Q
    ||||||| ||||  || | ||||| ||||| ||| ||||||    
T  32017998 gcttagttcattctctattctaggcatagggtaatgggtgt 32017958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 16610600 - 16610667
Alignment:
Q  127 cggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    ||||||||||||  |||||||||  |||||||||| ||||||||||| |||||||||||||| |||||    
T  16610600 cggtggttgaagacgaagtttgtttctcttcccttcaattatcatgggtggtggcttagtccgtttac 16610667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 12831615 - 12831519
Alignment:
Q  92 tacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    |||||||||| || | |||||||| | |  |||||  ||||||||||||||| |||  ||| |||||||| |||| |||||||||||||||||||||    
T  12831615 tacaggtggttgataagattaagtcgatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtcc 12831519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 29994642 - 29994718
Alignment:
Q  119 taacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttact 195  Q
    ||||||||  |||||||||||||||||||     ||||||||| |||||||||||||||||||||| ||| ||||||    
T  29994642 taacttttaagtggttgaaggtgaagtttccttttcttcccttcaattatcatggttggtggcttaatccgtttact 29994718  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 8006827 - 8006874
Alignment:
Q  148 gtcactcttccctttaattatcatggttggtggcttagtccatttact 195  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  8006827 gtcagtcttcccttcaattatcatggttggtggctcagtccatttact 8006874  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 12863553 - 12863494
Alignment:
Q  129 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    ||||||||||||||| |||  ||| |||||||| |||| |||||||||||||||||||||    
T  12863553 gtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtcc 12863494  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 26778784 - 26778719
Alignment:
Q  129 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    ||||||||||||||| ||| |  ||||| |||| |||||||||||||||||| ||||||| |||||    
T  26778784 gtggttgaaggtgaaatttttttctctttccttcaattatcatggttggtggtttagtccgtttac 26778719  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 27482737 - 27482677
Alignment:
Q  128 ggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    |||||||||||||||| |  || || |||||||| ||||||||||| ||||||||||||||    
T  27482737 ggtggttgaaggtgaaatacgttacacttcccttcaattatcatggctggtggcttagtcc 27482677  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 39839961 - 39839997
Alignment:
Q  152 ctcttccctttaattatcatggttggtggcttagtcc 188  Q
    ||||||||||||| |||||||||||||||||||||||    
T  39839961 ctcttccctttaactatcatggttggtggcttagtcc 39839997  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 12564993 - 12564942
Alignment:
Q  94 caggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagt 145  Q
    ||||||||||||||| ||||| ||||||||| |  |||||||||||||||||    
T  12564993 caggtggtggacaggtttaagctgctaacttataagtggttgaaggtgaagt 12564942  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 27843491 - 27843566
Alignment:
Q  119 taacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    |||| ||| ||||||||||||||||  ||||  |||||| ||| ||||||||||| ||||  ||||||||||||||    
T  27843491 taacctttaggtggttgaaggtgaaacttgtttctcttctcttcaattatcatggctggtaacttagtccatttac 27843566  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 32252175 - 32252218
Alignment:
Q  151 actcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    |||||||| || |||||||||||||||||||||||||| |||||    
T  32252175 actcttcctttcaattatcatggttggtggcttagtccgtttac 32252218  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 25326156 - 25326214
Alignment:
Q  128 ggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagt 186  Q
    ||||||||||||| || ||||| |||||| |||| ||||| ||| ||||||||||||||    
T  25326156 ggtggttgaaggtaaaatttgttactcttgccttcaattaccatcgttggtggcttagt 25326214  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 31706530 - 31706425
Alignment:
Q  89 ttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 188  Q
    |||| |||||||| |||| |||||||| |||  |||||  |||||| |||| ||||| | |  |||||||| | ||||| ||||| ||||||||||||||    
T  31706530 ttatccaggtggtcgacaagattaagtcgcttgcttttacgtggttaaaggcgaagtatatttctcttcccctcaattaccatgggtggtggcttagtcc 31706431  T
Q  189 atttac 194  Q
     |||||    
T  31706430 gtttac 31706425  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 14716140 - 14716112
Alignment:
Q  16 caaaatagttgtacaaatatcattactca 44  Q
    |||||||||||||||||||||||||||||    
T  14716140 caaaatagttgtacaaatatcattactca 14716112  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 18967887 - 18967951
Alignment:
Q  129 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccattta 193  Q
    ||||||||||| ||| ||||   ||||||| |||||| ||||||| || ||||||||||||||||    
T  18967887 gtggttgaaggcgaaatttgcttctcttccatttaatgatcatggatgatggcttagtccattta 18967951  T

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Target: scaffold0225 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 209
Target Start/End: Original strand, 6490 - 6619
Alignment:
Q  80 atagctcttttatacaggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtg 179  Q
    ||||| || |||| |||||||| || ||||||||||||||||||||    ||||| ||||||||||||   |||||||||||||| ||||||||||||||    
T  6490 atagcactattattcaggtggtagataggattaagttgctaactttcaattggttaaaggtgaagtttacaactcttccctttaactatcatggttggtg 6589  T
Q  180 gcttagtccatttactttactaggaatagg 209  Q
    ||| ||||| ||| || | ||||| |||||    
T  6590 gctaagtccgtttgctattctaggcatagg 6619  T

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Target: scaffold0795 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 2158 - 2257
Alignment:
Q  95 aggtggtggacaggattaagttgctaacttttcggtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtccatttac 194  Q
    |||||||||||| ||| |||| | |||| ||| ||||||||||||||||| | |   |||| ||||| |||||||||||||||||||| |||||||||||    
T  2158 aggtggtggacaagatcaagtcggtaacctttaggtggttgaaggtgaagctcgcttctctccccttcaattatcatggttggtggctcagtccatttac 2257  T

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