View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3485_low_40 (Length: 246)

Name: NF3485_low_40
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3485_low_40
NF3485_low_40
[»] chr1 (9 HSPs)
chr1 (20-240)||(27099981-27100201)
chr1 (4-236)||(3926940-3927172)
chr1 (64-161)||(9484435-9484532)
chr1 (58-145)||(22583596-22583683)
chr1 (63-142)||(29642439-29642518)
chr1 (63-145)||(31069253-31069336)
chr1 (66-136)||(25392738-25392808)
chr1 (80-145)||(25529683-25529748)
chr1 (62-142)||(44889481-44889561)
[»] chr2 (4 HSPs)
chr2 (17-240)||(9583771-9583996)
chr2 (71-215)||(13880266-13880410)
chr2 (71-215)||(14020391-14020535)
chr2 (63-160)||(32151164-32151261)
[»] chr5 (8 HSPs)
chr5 (5-237)||(42457219-42457451)
chr5 (62-232)||(6611900-6612064)
chr5 (72-162)||(18967442-18967532)
chr5 (58-138)||(22563914-22563994)
chr5 (20-127)||(464546-464653)
chr5 (58-164)||(4926396-4926502)
chr5 (67-153)||(14921155-14921241)
chr5 (114-143)||(26779181-26779210)
[»] chr6 (7 HSPs)
chr6 (2-172)||(24638758-24638928)
chr6 (3-107)||(3076384-3076488)
chr6 (65-164)||(10303574-10303673)
chr6 (78-148)||(17293191-17293261)
chr6 (59-145)||(18032141-18032227)
chr6 (58-99)||(15820157-15820198)
chr6 (3-160)||(19153681-19153837)
[»] chr4 (2 HSPs)
chr4 (84-235)||(5634365-5634516)
chr4 (65-152)||(29522071-29522158)
[»] chr7 (3 HSPs)
chr7 (65-214)||(10275017-10275165)
chr7 (58-131)||(40682323-40682396)
chr7 (58-138)||(1461971-1462051)
[»] scaffold0233 (1 HSPs)
scaffold0233 (114-148)||(11617-11651)
[»] scaffold0003 (1 HSPs)
scaffold0003 (66-147)||(290587-290668)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 27099981 - 27100201
Alignment:
Q  20 aacacacaaacaagagtcatgatttattgcaccacgctgaaacaagttatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaacc 119  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||   ||||||| |||||||| |||| ||||||    
T  27099981 aacacacaaacaagagtcatgatttattgcaccacgccgaaacaaattatcctttgttggtaacctattttaaaacagaagccaagcaaaaactacaacc 27100080  T
Q  120 ttcagagggatatccttatgccaaagagacttcacatccaccggaacgtcaactataggttgagatgtcagaaaattataagtactacgaacagagtcaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||    
T  27100081 ttcagagggatatccttatgccaaagagacttcacatccaccagaacgtcaactataggctaagatgtcagaaaattataagcactacgaacagagtaaa 27100180  T
Q  220 catttgatttttccaacgtcc 240  Q
    ||||||||||||| |||||||    
T  27100181 catttgatttttctaacgtcc 27100201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 3926940 - 3927172
Alignment:
Q  4 gagaaccacactcagtaacacacaaacaagagtcatgatttattgcaccacgctgaaacaagttatcctttgttggtaacctattccgaaacagacgcca 103  Q
    |||| |||||| ||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||  |||||||||||||    
T  3926940 gagagccacacccagtaacacacaagcaagagtcatgatttattgcaccacgccgaaataaattatcctttgttggtaacctattatgaaacagacgcca 3927039  T
Q  104 agcataaaccacaaccttcagagggatatccttatgccaaagagacttcacatccaccggaacgtcaactataggttgagatgtcagaaaattataagta 203  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||| |||  || | ||||||||||| |||| |    
T  3927040 agcaaaaaccacaaccttcagagggatatccttatgccatagagacttcgcatccacctgaccgtcaactaaaggccgataagtcagaaaattgtaagca 3927139  T
Q  204 ctacgaacagagtcaacatttgatttttccaac 236  Q
    |||||||||||||  ||||||||||||||||||    
T  3927140 ctacgaacagagtatacatttgatttttccaac 3927172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 161
Target Start/End: Complemental strand, 9484532 - 9484435
Alignment:
Q  64 agttatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgccaaagagacttcacatccacc 161  Q
    |||||||||||||||| |||||||  ||| | || ||||||||| ||| |||||||||||||||||||||||||||| |||| |||| |||| |||||    
T  9484532 agttatcctttgttggcaacctatcacgatataggcgccaagcaaaaagcacaaccttcagagggatatccttatgcaaaagcgactgcacaaccacc 9484435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 22583596 - 22583683
Alignment:
Q  58 gaaacaagttatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgccaaag 145  Q
    |||| ||||||||||||||  | |||||||  ||||||||||| |||||| ||| ||||||||||||||| |||||||||||||||||    
T  22583596 gaaataagttatcctttgtatgaaacctatctcgaaacagacgtcaagcaaaaagcacaaccttcagaggaatatccttatgccaaag 22583683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 29642439 - 29642518
Alignment:
Q  63 aagttatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgcca 142  Q
    |||||||| || |||||||| ||||||||||| |||||||||||| |||||  |||||||||| |||||| ||| |||||    
T  29642439 aagttatctttggttggtaatctattccgaaatagacgccaagcaaaaaccgtaaccttcagacggatatgcttttgcca 29642518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 31069336 - 31069253
Alignment:
Q  63 aagttatcctttgttggtaacctattccgaaacagacgccaagcataaaccac-aaccttcagagggatatccttatgccaaag 145  Q
    |||||||||||||| || |||||||  |||||||||| ||||||| ||| ||| ||| ||||||||||||||||| | ||||||    
T  31069336 aagttatcctttgtgggcaacctatctcgaaacagacaccaagcaaaaagcacaaactttcagagggatatccttgttccaaag 31069253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 25392738 - 25392808
Alignment:
Q  66 ttatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatcctt 136  Q
    ||||||||||| || ||||||| ||| ||||  ||||||||| | | ||||||||||||||||| ||||||    
T  25392738 ttatcctttgtaggcaacctatcccggaacaaccgccaagcaaacaacacaaccttcagagggacatcctt 25392808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 25529748 - 25529683
Alignment:
Q  80 taacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgccaaag 145  Q
    ||||||||  ||||||||| |||||||| ||| ||| ||||| || || |||||||||||||||||    
T  25529748 taacctatatcgaaacagaagccaagcaaaaagcactacctttagtggaatatccttatgccaaag 25529683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 44889481 - 44889561
Alignment:
Q  62 caagttatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgcca 142  Q
    ||||||| | || |||||||| |||||  |||| |||||||||||| ||||||||||||| || || |||| ||| |||||    
T  44889481 caagttacctttggttggtaatctattatgaaatagacgccaagcaaaaaccacaacctttaggggaatatgcttttgcca 44889561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 9583771 - 9583996
Alignment:
Q  17 agtaacacacaaacaagagtcatgatttattgcaccacgctgaaacaagttatcctttgttggtaacctattccgaaacagacgccaa-gcataaaccac 115  Q
    |||||||||||| ||||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  9583771 agtaacacacaagcaagagtcatgatttatggcaccacgtcgaaataagttatcctttgttggtaacctattccgaaacagacgccaaagcaaaaaccac 9583870  T
Q  116 aaccttcagagggatatccttatgccaaagagacttcacatccaccggaacgtcaactataggttgagatgtcagaaaattataagtactacgaacagag 215  Q
    |||||||| |||||||||||||||||||||| |||||||||||| | ||||||||||| |||| |||||||||| |||||| ||||||||||||||||||    
T  9583871 aaccttcatagggatatccttatgccaaagaaacttcacatccatcagaacgtcaactgtaggctgagatgtcaaaaaattgtaagtactacgaacagag 9583970  T
Q  216 tcaacatttga-tttttccaacgtcc 240  Q
    | ||||||||| ||||||||||||||    
T  9583971 taaacatttgattttttccaacgtcc 9583996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 13880410 - 13880266
Alignment:
Q  71 ctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgccaaagagacttcacatccaccggaacgtca 170  Q
    ||||||||| ||||||||  ||||||||||||||||| ||| ||||||||||| | ||| |||||||||||||||  ||||| |||||||||||  | ||    
T  13880410 ctttgttggcaacctattaagaaacagacgccaagcaaaaatcacaaccttcataaggacatccttatgccaaagtaacttcgcatccaccggattgaca 13880311  T
Q  171 actataggttgagatgtcagaaaattataagtactacgaacagag 215  Q
    |   |||| |||| ||||||||||||||||| |||||||||||||    
T  13880310 aaagtaggctgagctgtcagaaaattataagcactacgaacagag 13880266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 14020535 - 14020391
Alignment:
Q  71 ctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgccaaagagacttcacatccaccggaacgtca 170  Q
    ||||||||| ||||||||  ||||||||||||||||| ||| ||||||||||| | ||| |||||||||||||||  ||||| |||||||||||  | ||    
T  14020535 ctttgttggcaacctattaagaaacagacgccaagcaaaaatcacaaccttcataaggacatccttatgccaaagtaacttcgcatccaccggattgaca 14020436  T
Q  171 actataggttgagatgtcagaaaattataagtactacgaacagag 215  Q
    |   |||| |||| ||||||||||||||||| |||||||||||||    
T  14020435 aaagtaggctgagctgtcagaaaattataagcactacgaacagag 14020391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 32151261 - 32151164
Alignment:
Q  63 aagttatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgccaaagagacttcacatccac 160  Q
    |||||||| ||||||||||| |||||  | ||||||||| ||||  ||||||| || ||||||||||||||||| ||||||||   ||||||||||||    
T  32151261 aagttatcttttgttggtaatctattatgtaacagacgcaaagcgaaaaccacgacattcagagggatatccttttgccaaagcagcttcacatccac 32151164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 42457451 - 42457219
Alignment:
Q  5 agaaccacactcagtaacacacaaacaagagtcatgatttattgcaccacgctgaaacaagttatcctttgttggtaacctattccgaaacagacgccaa 104  Q
    |||||||||| ||| ||||||||||||||| || | |||||||||||||||  |||| |  |||||||| ||||||||||| || |||||||   |||||    
T  42457451 agaaccacacccagcaacacacaaacaagaatcgtaatttattgcaccacggcgaaatagattatccttagttggtaacctgtttcgaaacaagtgccaa 42457352  T
Q  105 gcataaaccacaaccttcagagggatatccttatgccaaagagacttcacatccaccggaacgtcaactataggttgagatgtcagaaaattataagtac 204  Q
    ||| | ||||||||||| ||||| |||||||||| ||||||||||||  |  |||||||||  |||| |   ||||||| ||||||| |||| |||| ||    
T  42457351 gcaaagaccacaaccttaagaggaatatccttataccaaagagactttgctgccaccggaatatcaattggtggttgagttgtcagataattgtaagcac 42457252  T
Q  205 tacgaacagagtcaacatttgatttttccaacg 237  Q
    ||||| |||||| ||||||||||||||||||||    
T  42457251 tacgaccagagtaaacatttgatttttccaacg 42457219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 232
Target Start/End: Complemental strand, 6612064 - 6611900
Alignment:
Q  62 caagttatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgccaaagagacttcacatccacc 161  Q
    ||||||||| |||||||| || |||||||||||| ||      ||| ||||||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  6612064 caagttatcttttgttggcaatctattccgaaacgga------gcaaaaaccacaaccttcagagggatatccttatgtcaaagcaacttcacatccacc 6611971  T
Q  162 ggaacgtcaactataggttgagatgtcagaaaattataagtactacgaacagagtcaacatttgatttttc 232  Q
    ||| ||||||| ||    ||||  ||| ||||||| |||| |||||||||||||  | |||| ||||||||    
T  6611970 ggagcgtcaacaatgacctgagcagtctgaaaattgtaagcactacgaacagagaaatcattagatttttc 6611900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 18967532 - 18967442
Alignment:
Q  72 tttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgccaaagagacttcacatccaccg 162  Q
    |||||||| |||||||  ||||||| |||||||||| ||| ||||||||||| ||||||||||||||||||||| ||| || || ||||||    
T  18967532 tttgttggcaacctatctcgaaacatacgccaagcaaaaagcacaaccttcatagggatatccttatgccaaagcgacgtcgcagccaccg 18967442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 22563994 - 22563914
Alignment:
Q  58 gaaacaagttatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttat 138  Q
    |||| ||||||||||||   ||||||||||  |||||||| ||||||||| ||| ||| ||||||| ||||||||||||||    
T  22563994 gaaataagttatccttttcaggtaacctatctcgaaacaggcgccaagcaaaaagcacgaccttcaaagggatatccttat 22563914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 464653 - 464546
Alignment:
Q  20 aacacacaaacaagagtcatgatttattgcaccacgctgaaacaagttatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaacc 119  Q
    |||||||| |||| | | || ||||||  |||||||  ||||||||||||| || ||||| || |||||| |||||||| |||||||| | || ||||||    
T  464653 aacacacagacaataattattatttataacaccacgacgaaacaagttatctttggttggcaatctattctgaaacagatgccaagcaaacacaacaacc 464554  T
Q  120 ttcagagg 127  Q
    ||||||||    
T  464553 ttcagagg 464546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 4926502 - 4926396
Alignment:
Q  58 gaaacaagttatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgccaaagagacttcacatc 157  Q
    ||||||||||||| || ||||| || ||||| || | |||||||||| || || |||||||||| ||||| | || ||| ||||||||  | ||||| ||    
T  4926502 gaaacaagttatctttggttggcaatctatttcggagcagacgccaaacaaaacccacaacctttagaggaacatacttttgccaaagcaatttcacctc 4926403  T
Q  158 caccgga 164  Q
    |||||||    
T  4926402 caccgga 4926396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 14921155 - 14921241
Alignment:
Q  67 tatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgccaaagagacttca 153  Q
    ||||||| ||||| ||||| |  ||||||| ||| |||||  |||  |||||||| ||||||| |||||||||||||||| ||||||    
T  14921155 tatccttagttggcaacctgtcacgaaacaaacgtcaagcgaaaagaacaacctttagagggacatccttatgccaaagaaacttca 14921241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 143
Target Start/End: Original strand, 26779181 - 26779210
Alignment:
Q  114 acaaccttcagagggatatccttatgccaa 143  Q
    ||||||||||||||||||||||||||||||    
T  26779181 acaaccttcagagggatatccttatgccaa 26779210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 172
Target Start/End: Complemental strand, 24638928 - 24638758
Alignment:
Q  2 cagagaaccacactcagtaacacacaaacaagagtcatgatttattgcaccacgctgaaacaagttatcctttgttggtaacctattccgaaacagacgc 101  Q
    |||||| ||||| ||||||||||| | |||||| |||| | ||||  | |||||| ||| ||||||||| |||||||  || |||||| |||| ||||||    
T  24638928 cagagagccacattcagtaacacagagacaagaatcattagttataactccacgccgaagcaagttatcttttgttgacaatctattctgaaatagacgc 24638829  T
Q  102 caagcataaaccacaaccttcagagggatatccttatgccaaagagacttcacatccaccggaacgtcaac 172  Q
    |||||| ||||||||||||||||||||||||||||||| |||||   |||||||||||||||| |||||||    
T  24638828 caagcaaaaaccacaaccttcagagggatatccttatgtcaaagcagcttcacatccaccggagcgtcaac 24638758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 3076488 - 3076384
Alignment:
Q  3 agagaaccacactcagtaacacacaaacaagagtcatgatttattgcaccacgctgaaacaagttatcctttgttggtaacctattccgaaacagacgcc 102  Q
    ||||| |||||| || |||||||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  3076488 agagagccacacccactaacacacaaacaagaatcgtgatttattgctccacgccgaaacaagttatcctttgttggtaagctattccgaaacagacgcc 3076389  T
Q  103 aagca 107  Q
     ||||    
T  3076388 gagca 3076384  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 10303574 - 10303673
Alignment:
Q  65 gttatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgccaaagagacttcacatccaccgga 164  Q
    ||||||||||||||| |||||||| |||||||  ||||||||  ||| |||||| |||| ||||| |||||||||||||||  |||  ||||||||||||    
T  10303574 gttatcctttgttggcaacctattacgaaacatccgccaagcgaaaatcacaacattcaaagggacatccttatgccaaagcaactcaacatccaccgga 10303673  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 17293191 - 17293261
Alignment:
Q  78 ggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgccaaagaga 148  Q
    |||| ||||||  |||||| |||||||||| | | ||||||||||||||||| ||| ||||||||||||||    
T  17293191 ggtagcctattgtgaaacacacgccaagcaaacaacacaaccttcagagggacatctttatgccaaagaga 17293261  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 18032141 - 18032227
Alignment:
Q  59 aaacaagttatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgccaaag 145  Q
    |||||||||||  || ||||| |  || ||||||||||||||||||||| |||||| ||||||||| || ||||  || ||||||||    
T  18032141 aaacaagttatatttggttggcagtctgttccgaaacagacgccaagcaaaaaccataaccttcaggggaatatttttttgccaaag 18032227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 15820157 - 15820198
Alignment:
Q  58 gaaacaagttatcctttgttggtaacctattccgaaacagac 99  Q
    |||| |||||||| ||||||||||| ||||||||||||||||    
T  15820157 gaaagaagttatcttttgttggtaatctattccgaaacagac 15820198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 160
Target Start/End: Original strand, 19153681 - 19153837
Alignment:
Q  3 agagaaccacactcagtaacacacaaacaagagtcatgatttattgcaccacgctgaaacaagttatcctttgttggtaacctattccgaaacagacgcc 102  Q
    ||||| |||||  |||||||||||| |||||| |||| ||| ||  | |||||| |||  ||||| || ||||||||| | |||||||| | ||||||||    
T  19153681 agagagccacatccagtaacacacagacaagaatcattattgataactccacgccgaagtaagttgtcttttgttggt-atctattccgcagcagacgcc 19153779  T
Q  103 aagcataaaccacaaccttcagagggatatccttatgccaaagagacttcacatccac 160  Q
    ||||  |||||    ||||||| ||||||||||| ||||| ||   ||||||||||||    
T  19153780 aagcgaaaaccttccccttcagcgggatatccttttgccagagccgcttcacatccac 19153837  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 235
Target Start/End: Complemental strand, 5634516 - 5634365
Alignment:
Q  84 ctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgccaaagagacttcacatccaccggaacgtcaactataggttgag 183  Q
    |||||||||||||  ||||||||  ||| ||||||||||| |||||||||||| ||||| || |||||||||||||| |||  |||||| ||  | ||||    
T  5634516 ctattccgaaacaatcgccaagcgaaaatcacaaccttcaaagggatatccttttgccatagcgacttcacatccacaggagtgtcaacaatctgctgag 5634417  T
Q  184 atgtcagaaaattataagtactacgaacagagtcaacatttgatttttccaa 235  Q
      ||| | ||||| |||| |||||||||||||| || |||||||||||||||    
T  5634416 tagtctggaaattgtaagcactacgaacagagtaaaaatttgatttttccaa 5634365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 29522071 - 29522158
Alignment:
Q  65 gttatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgccaaagagacttc 152  Q
    |||||| ||||| || |||||||  |||||||||| |||| || ||| |||||||||||||| |||||||||||| ||||| ||||||    
T  29522071 gttatcttttgtaggcaacctatcacgaaacagacaccaaacaaaaaacacaaccttcagagagatatccttatggcaaagggacttc 29522158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 10275165 - 10275017
Alignment:
Q  65 gttatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgccaaagagacttcacatccaccgga 164  Q
    |||||||||||||||  ||||||| || ||||| ||||||| | ||| ||||||||||| ||||| ||| |||||||||||  |||||||||||||  ||    
T  10275165 gttatcctttgttggcgacctattacggaacagccgccaagaaaaaatcacaaccttcaaagggacatctttatgccaaagtaacttcacatccactaga 10275066  T
Q  165 acgtcaactataggttgagatgtcagaaaattataagtactacgaacaga 214  Q
      || ||| ||||| ||||  || |||||| |||||| ||||||||||||    
T  10275065 gtgt-aacaataggctgagcagttagaaaaatataagcactacgaacaga 10275017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 40682396 - 40682323
Alignment:
Q  58 gaaacaagttatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggata 131  Q
    ||||||| ||||| || ||||||||  ||||||||||||||||||||||| | ||||||||||| |||||||||    
T  40682396 gaaacaaattatctttggttggtaatatattccgaaacagacgccaagcaaataccacaacctttagagggata 40682323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 1462051 - 1461971
Alignment:
Q  58 gaaacaagttatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttat 138  Q
    |||| |||||||||||||| ||||||||||  ||||| || |||||| || ||| ||| |||||||  | |||||||||||    
T  1462051 gaaataagttatcctttgtaggtaacctatctcgaaataggcgccaaacaaaaagcactaccttcaatgagatatccttat 1461971  T

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Target: scaffold0233 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 11651 - 11617
Alignment:
Q  114 acaaccttcagagggatatccttatgccaaagaga 148  Q
    |||||||||||||||| ||||||||||||||||||    
T  11651 acaaccttcagagggacatccttatgccaaagaga 11617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 290668 - 290587
Alignment:
Q  66 ttatcctttgttggtaacctattccgaaacagacgccaagcataaaccacaaccttcagagggatatccttatgccaaagag 147  Q
    |||||||| ||||| ||||| |  |||| ||||||||||||| | |  || ||||||||||| |||||||| ||||||||||    
T  290668 ttatccttagttggcaacctgtcacgaatcagacgccaagcaaagagaacgaccttcagaggaatatccttgtgccaaagag 290587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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