View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3485_low_47 (Length: 239)
Name: NF3485_low_47
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_low_47 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 4205906 - 4206093
Alignment:
| Q |
1 |
ttctcaatttcatgatgttcatgttaccagttgagctggaaaagcaaacattttgtgatctaaaagtcctcaataacacagagaactatgttgctttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4205906 |
ttctcaatttcatgatgttcattttaccagttgagctggaaaagcaaacattttgtgatctaaaagtcctcaataacacagagaactatgttgctttcaa |
4206005 |
T |
|
| Q |
101 |
ggtaatcaattagcggcttcacattcctcaacttacttcttgttgctaaatgtgtttttctctacattattctttgctgcttttgatt |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4206006 |
ggtaatcaattagcggcttcacattcctcaacttacttcttgttgctaaatgtgtttttctctacattattctttgctgcttttgatt |
4206093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 222
Target Start/End: Original strand, 4206087 - 4206117
Alignment:
| Q |
192 |
tttgattctattgttacattatacttgctag |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4206087 |
tttgattctattgttacattatacttgctag |
4206117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University