View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3485_low_49 (Length: 238)

Name: NF3485_low_49
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3485_low_49
NF3485_low_49
[»] chr8 (1 HSPs)
chr8 (153-200)||(3036534-3036581)
[»] chr7 (1 HSPs)
chr7 (155-200)||(24934749-24934794)
[»] chr6 (3 HSPs)
chr6 (153-201)||(28478663-28478711)
chr6 (153-201)||(29791118-29791166)
chr6 (154-201)||(29694677-29694722)
[»] chr4 (2 HSPs)
chr4 (157-201)||(37175798-37175842)
chr4 (157-201)||(39292309-39292353)
[»] chr2 (2 HSPs)
chr2 (153-187)||(17897868-17897902)
chr2 (153-190)||(39955494-39955531)
[»] chr3 (1 HSPs)
chr3 (153-190)||(31110632-31110669)
[»] chr5 (2 HSPs)
chr5 (157-201)||(2523798-2523842)
chr5 (157-201)||(34903400-34903444)


Alignment Details
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 3036534 - 3036581
Alignment:
Q  153 ttttaatatgttgaatgcataatttttaagataaagttgctactttaa 200  Q
    |||||||| ||||||| || ||||||||||||||||||||||||||||    
T  3036534 ttttaataagttgaatacacaatttttaagataaagttgctactttaa 3036581  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 24934794 - 24934749
Alignment:
Q  155 ttaatatgttgaatgcataatttttaagataaagttgctactttaa 200  Q
    |||||| |||||||||| ||||| ||||||||||||||||||||||    
T  24934794 ttaataagttgaatgcacaatttctaagataaagttgctactttaa 24934749  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 28478663 - 28478711
Alignment:
Q  153 ttttaatatgttgaatgcataatttttaagataaagttgctactttaag 201  Q
    |||||||||||||||| || ||||| |||||||||||| ||||||||||    
T  28478663 ttttaatatgttgaatacacaatttctaagataaagtttctactttaag 28478711  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 29791118 - 29791166
Alignment:
Q  153 ttttaatatgttgaatgcataatttttaagataaagttgctactttaag 201  Q
    |||||||||||||||| || ||||| |||||||||||| ||||||||||    
T  29791118 ttttaatatgttgaatacacaatttctaagataaagtttctactttaag 29791166  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 29694677 - 29694722
Alignment:
Q  154 tttaatatgttgaatgcataatttttaagataaagttgctactttaag 201  Q
    ||||||||||||||  |||||||||||| |||||||| ||||||||||    
T  29694677 tttaatatgttgaa--cataatttttaaaataaagtttctactttaag 29694722  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 37175798 - 37175842
Alignment:
Q  157 aatatgttgaatgcataatttttaagataaagttgctactttaag 201  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||    
T  37175798 aataagttgaatgcataatttccaagataaagttgctactttaag 37175842  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 39292353 - 39292309
Alignment:
Q  157 aatatgttgaatgcataatttttaagataaagttgctactttaag 201  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||    
T  39292353 aataagttgaatgcataatttccaagataaagttgctactttaag 39292309  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 17897868 - 17897902
Alignment:
Q  153 ttttaatatgttgaatgcataatttttaagataaa 187  Q
    ||||||||||||||||||| |||||||||||||||    
T  17897868 ttttaatatgttgaatgcacaatttttaagataaa 17897902  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 39955494 - 39955531
Alignment:
Q  153 ttttaatatgttgaatgcataatttttaagataaagtt 190  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  39955494 ttttaatatgttgaatgcacaattttaaagataaagtt 39955531  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 31110669 - 31110632
Alignment:
Q  153 ttttaatatgttgaatgcataatttttaagataaagtt 190  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  31110669 ttttaatatctcgaatgcataatttttaagataaagtt 31110632  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 2523842 - 2523798
Alignment:
Q  157 aatatgttgaatgcataatttttaagataaagttgctactttaag 201  Q
    |||| |||||||||||||||| |||||||||||| || |||||||    
T  2523842 aataagttgaatgcataatttctaagataaagttactgctttaag 2523798  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 34903400 - 34903444
Alignment:
Q  157 aatatgttgaatgcataatttttaagataaagttgctactttaag 201  Q
    |||| |||||||||| |||||| ||||||||||| ||||||||||    
T  34903400 aataagttgaatgcacaattttcaagataaagttactactttaag 34903444  T

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