View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_low_5 (Length: 573)
Name: NF3485_low_5
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 305 - 558
Target Start/End: Original strand, 61212 - 61468
Alignment:
| Q |
305 |
catgttataataacaataacaaattaaaaag-aaatatgtctgggcaggatcattcgatcaaaagtgtctgtgcga--gagatgcagttacaatacaata |
401 |
Q |
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| T |
61212 |
catgttataataacaataacaaattaaaaaggaaatatgtctgggtaggatcattcgatcaaaagtgtctgtgctacagagatgcagttacaatacaata |
61311 |
T |
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| Q |
402 |
catgcatacacgtacatagattgggttgggagaatagagaatacggacagagaagacgaaatgaagataactaattcaaatgaaatgtttataacaacca |
501 |
Q |
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| T |
61312 |
catgcatacacgtacatagattgggttgggagaatagagaatacggagagagaagacgaaatgaagataactaattcaaatgaaatgtttataacaacca |
61411 |
T |
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| Q |
502 |
tgacaacaaattgggacctttggatatcgaaatttacggacagtataagttttatct |
558 |
Q |
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| T |
61412 |
tgacaacaaattgggacctttggatatcgaaatttacggacagaataagttttatct |
61468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 82 - 309
Target Start/End: Original strand, 60887 - 61124
Alignment:
| Q |
82 |
gagttatgatctatctatttaccaatttggtaatcgatttcagatctgtattgtattgtatgcaaaatgtcagatccaacttcattctctagaaagctaa |
181 |
Q |
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| T |
60887 |
gagttatgatctatctatttaccaatttggtaatcgatttcagatctgtattgtattgtatgcaaaatgtcagatccaacttcattctctagaaagctaa |
60986 |
T |
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| Q |
182 |
ttagctaaata----------caatgcaattctaggaagtacgaatgcatacatggacattggccacactattagtattgatacgttgatactagtagta |
271 |
Q |
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| T |
60987 |
ttagctaaatacaatgcaatgcaatgcaattctaggaagtacgaatgcatacacggacattggccacactattagtattgatacgttgatactagtagta |
61086 |
T |
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| Q |
272 |
atgtaagaaaatgacatgattgcaattcaatcacatgt |
309 |
Q |
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| T |
61087 |
atgtaagaaaatgacatgattgcaattcaatcgcatgt |
61124 |
T |
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