View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3485_low_50 (Length: 237)

Name: NF3485_low_50
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3485_low_50
NF3485_low_50
[»] chr6 (11 HSPs)
chr6 (1-223)||(6466358-6466580)
chr6 (61-218)||(6529229-6529386)
chr6 (33-218)||(6506516-6506701)
chr6 (43-218)||(6472013-6472188)
chr6 (59-218)||(6519559-6519718)
chr6 (60-218)||(6460811-6460969)
chr6 (71-218)||(6497703-6497850)
chr6 (71-218)||(6515090-6515237)
chr6 (78-215)||(7204116-7204254)
chr6 (78-215)||(7238867-7239005)
chr6 (70-208)||(6458416-6458554)
[»] chr7 (3 HSPs)
chr7 (88-223)||(9664318-9664453)
chr7 (37-208)||(3752795-3752966)
chr7 (37-209)||(4047271-4047443)
[»] chr4 (1 HSPs)
chr4 (88-223)||(13535342-13535477)


Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6466580 - 6466358
Alignment:
Q  1 tctccaacaatgcatcatttcaccnnnnnnnccaaacctttcctattcccacagactcattccacggtcctccctgaccccacaaacttcttctctccaa 100  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6466580 tctccaacaatgcatcatttcaccaaaaaaaccaaacctttcctattcccacagactcattccacggtcctccctgaccccacaaacttcttctctccaa 6466481  T
Q  101 atctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccatatctcatcaaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6466480 atctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccatatctcatcaaatc 6466381  T
Q  201 ttcaaactcatcactttcccttt 223  Q
    |||||||||||||||||| ||||    
T  6466380 ttcaaactcatcactttctcttt 6466358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 61 - 218
Target Start/End: Complemental strand, 6529386 - 6529229
Alignment:
Q  61 tccacggtcctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatg 160  Q
    ||||| ||||| ||||||||| | || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  6529386 tccactgtccttcctgacccctccaaattcttctctccaaatctgctatccacacccctccctacaaactctttcttccaaaactttgttctcaacaatg 6529287  T
Q  161 gtgaccaacctgaatacattcatccatatctcatcaaatcttcaaactcatcactttc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6529286 gtgaccaacctgaatacattcatccatatctcatcaaatcttcagactcatcactttc 6529229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 33 - 218
Target Start/End: Complemental strand, 6506701 - 6506516
Alignment:
Q  33 caaacctttcctattcccacagactcattccacggtcctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactct 132  Q
    ||||||||| |||||||||||   | ||||||| ||||||||||||||| | || |||||||||||||||||||||||||||||||| || |||||||||    
T  6506701 caaaccttttctattcccacaaggtaattccactgtcctccctgacccctccaaattcttctctccaaatctgctatccacacccctgcctacaaactct 6506602  T
Q  133 ttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccatatctcatcaaatcttcaaactcatcactttc 218  Q
    ||||||||||||||||||||||| ||||||||   |||||||||| ||||||| || ||||||||||| |||||||||||||||||    
T  6506601 ttcttccaaaactttgttctcaacaatggtgatgcacctgaatactttcatccttacctcatcaaatcatcaaactcatcactttc 6506516  T

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Target: chr6; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 43 - 218
Target Start/End: Original strand, 6472013 - 6472188
Alignment:
Q  43 ctattcccacagactcattccacggtcctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaa 142  Q
    |||||||||||||  || ||||| || |||||||||||| | || |||||||| |||||| ||||||||||||||||||| |||||||||||||||||||    
T  6472013 ctattcccacagatacaatccactgttctccctgacccctccaaattcttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaa 6472112  T
Q  143 actttgttctcaaaaatggtgaccaacctgaatacattcatccatatctcatcaaatcttcaaactcatcactttc 218  Q
    || |||| || |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||    
T  6472113 acattgtcctaaaaaatggtgaccaacctgaatacattcatccttacctcatcaaatcatcaaactcatcactttc 6472188  T

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Target: chr6; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 6519559 - 6519718
Alignment:
Q  59 attccacggtcctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaa 158  Q
    ||||||| |||| |||||||||| | || ||||||||||||||| | ||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  6519559 attccactgtccaccctgacccctccaaattcttctctccaaatttactatccaaacccctccctacaaactctttcttccaaaactttgttctcaaaaa 6519658  T
Q  159 tggtgaccaacctgaatacattcatccatatctcatcaaatcttcaaactcatcactttc 218  Q
     ||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||    
T  6519659 cggtgaccaacctgaatatattcatccatacctcattaaatcatcaaactcatcactttc 6519718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 60 - 218
Target Start/End: Original strand, 6460811 - 6460969
Alignment:
Q  60 ttccacggtcctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaat 159  Q
    |||||| ||||||||||||||| | || ||||||||| ||||||||||||||| ||| ||||| |||||||| ||||||||||||||||||||| | |||    
T  6460811 ttccactgtcctccctgacccctccaaattcttctcttcaaatctgctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaat 6460910  T
Q  160 ggtgaccaacctgaatacattcatccatatctcatcaaatcttcaaactcatcactttc 218  Q
    ||||||||||| |||||| ||||||| || ||||||| |||||| |||||||| |||||    
T  6460911 ggtgaccaaccggaatactttcatccttacctcatcagatcttccaactcatctctttc 6460969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 218
Target Start/End: Complemental strand, 6497850 - 6497703
Alignment:
Q  71 tccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacc 170  Q
    |||| |||||| | || |||||||||  |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  6497850 tcccagacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacc 6497751  T
Q  171 tgaatacattcatccatatctcatcaaatcttcaaactcatcactttc 218  Q
    ||||||  ||||||| || ||||||||||| ||| |||||||||||||    
T  6497750 tgaatattttcatccttacctcatcaaatcatcagactcatcactttc 6497703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 218
Target Start/End: Original strand, 6515090 - 6515237
Alignment:
Q  71 tccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacc 170  Q
    ||||||| ||| | || |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||  ||||| | | |||||   |||    
T  6515090 tccctgatccctccaagttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacc 6515189  T
Q  171 tgaatacattcatccatatctcatcaaatcttcaaactcatcactttc 218  Q
    ||||||||| ||||| || ||||||| |||  ||||||||||||||||    
T  6515190 tgaatacatccatccttacctcatcagatcaacaaactcatcactttc 6515237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 215
Target Start/End: Original strand, 7204116 - 7204254
Alignment:
Q  78 ccccacaaacttcttctctccaaatctgctatccacacccc-tccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaata 176  Q
    |||| ||||||||||||  | |||||  ||||||||||||| ||||||| |  |||||||||||||||||||||||||  ||||||||||||||||||||    
T  7204116 cccctcaaacttcttcttccgaaatcatctatccacaccccctccccactatttctttcttccaaaactttgttctcatcaatggtgaccaacctgaata 7204215  T
Q  177 cattcatccatatctcatcaaatcttcaaactcatcact 215  Q
    ||||||||| || ||||| ||||| || |||||| ||||    
T  7204216 cattcatccctacctcattaaatcatcgaactcaccact 7204254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 215
Target Start/End: Original strand, 7238867 - 7239005
Alignment:
Q  78 ccccacaaacttcttctctccaaatctgctatccacacccc-tccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaata 176  Q
    |||| ||||||||||||  | |||||  ||||||||||||| ||||||| |  |||||||||||||||||||||||||  ||||||||||||||||||||    
T  7238867 cccctcaaacttcttcttccgaaatcatctatccacaccccctccccactatttctttcttccaaaactttgttctcatcaatggtgaccaacctgaata 7238966  T
Q  177 cattcatccatatctcatcaaatcttcaaactcatcact 215  Q
    ||||||||| || ||||| ||||| || |||||| ||||    
T  7238967 cattcatccctacctcattaaatcatcgaactcaccact 7239005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 6458554 - 6458416
Alignment:
Q  70 ctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaac 169  Q
    ||||| |||||  |||||||||||||||| ||||| || ||  | || ||||| |||||||||||||||||||| ||||||||  |||||||||||  ||    
T  6458554 ctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacac 6458455  T
Q  170 ctgaatacattcatccatatctcatcaaatcttcaaact 208  Q
    |||| |||||||| || || ||||||||||| |||||||    
T  6458454 ctgagtacattcacccttacctcatcaaatcctcaaact 6458416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 9664318 - 9664453
Alignment:
Q  88 ttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccat 187  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| || |    
T  9664318 ttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaatacattcaccctt 9664417  T
Q  188 atctcatcaaatcttcaaactcatcactttcccttt 223  Q
    ||||| ||||||| || |||||||||||||| ||||    
T  9664418 atctcgtcaaatcgtcgaactcatcactttctcttt 9664453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 37 - 208
Target Start/End: Original strand, 3752795 - 3752966
Alignment:
Q  37 cctttcctattcccacagactcattccacggtcctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttct 136  Q
    ||||||||||| || || |||||||| || ||||||||  ||||  ||||||||||||| | ||| || ||||||||||||||||| |||||||||||||    
T  3752795 cctttcctatttcctcaaactcattcaacagtcctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttct 3752894  T
Q  137 tccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccatatctcatcaaatcttcaaact 208  Q
    ||||||||||||||||| | |||||||||  ||||||||||||||| || || ||||||||||| |||||||    
T  3752895 tccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatcctcaaact 3752966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 209
Target Start/End: Complemental strand, 4047443 - 4047271
Alignment:
Q  37 cctttcctattcccacagactcattccacggtcctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttct 136  Q
    ||||||||||| || || |||||||| || ||||| ||  ||||  |||| |||||||| | |||  | ||||||||||| ||||| |||||||| ||||    
T  4047443 cctttcctatttcctcaaactcattcaactgtccttccaaacccttcaaatttcttctcacaaaacttactatccacacctctccctacaaactcattct 4047344  T
Q  137 tccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccatatctcatcaaatcttcaaactc 209  Q
    ||||||| ||||||||  |||||||||| |||| |||||||||||| || || ||  ||||||| ||||||||    
T  4047343 tccaaaattttgttctacaaaatggtgatcaacatgaatacattcacccttaccttgtcaaatcctcaaactc 4047271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 13535342 - 13535477
Alignment:
Q  88 ttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccat 187  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| || |    
T  13535342 ttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaatacattcaccctt 13535441  T
Q  188 atctcatcaaatcttcaaactcatcactttcccttt 223  Q
    ||||| ||||||| || |||||||||||||| ||||    
T  13535442 atctcgtcaaatcgtcgaactcatcactttctcttt 13535477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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