View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_low_51 (Length: 237)
Name: NF3485_low_51
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35631429 - 35631650
Alignment:
| Q |
1 |
atttactcaattttcacaacttgacaagctgaaacccattatgagtacattatctcatagtgagtgttactccaaaattttagnnnnnnnnaagttaaaa |
100 |
Q |
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| T |
35631429 |
atttactcatttttcacaacttgacaagctgaaacccattatgagtacattatctcatagtgagtgttactccaaaattttagttttttttaagttaaaa |
35631528 |
T |
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| Q |
101 |
ttaatagttataccatcatatgcatannnnnnnaacaacatattcattatgaaatttgataactttagtgtaacaaagttctcgagaaatattcaatcat |
200 |
Q |
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| T |
35631529 |
ttaatagttataccatcatatgcatattttttaaacaacatattcattatgaaatttgataactttagtgtaacaaagttctcgagaaatattcaatcat |
35631628 |
T |
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| Q |
201 |
attttatcttgtgaatatttat |
222 |
Q |
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| T |
35631629 |
actttatcttgtgaatatttat |
35631650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 10300272 - 10300187
Alignment:
| Q |
137 |
aacatattcattatgaaatttgataactttagtgtaacaaagttctcgagaaatattcaatcatattttatcttgtgaatatttat |
222 |
Q |
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| T |
10300272 |
aacatattcattatgaaatttgataactttagtgtaacaaagttgtcgacagagattcaatcatagtctatgctgtaaatatttat |
10300187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 10320708 - 10320638
Alignment:
| Q |
137 |
aacatattcattatgaaatttgataactttagtgtaacaaagttctcgagaaatattcaatcatattttat |
207 |
Q |
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| T |
10320708 |
aacatattcattatgaaatttgataactttagtgtaacaaagttgtcgacagaaaatcaatcatagtttat |
10320638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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