View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_low_54 (Length: 231)
Name: NF3485_low_54
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 3159467 - 3159265
Alignment:
| Q |
15 |
cataggcactacacacacgatgacaccattaataatttgagatggaagtaactcagtgttattgtaacaagatatgttggtggtgtcaaacacctcagac |
114 |
Q |
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| T |
3159467 |
catagacactacacacacgacgacaccattaataatttgagatggaagtaactcggtgttattgtaacaagatatgttggtggtgtcaaacacctcagac |
3159368 |
T |
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| Q |
115 |
acgccttcaatctaaaatgtcggtgcgattttatgccctatatatactcatcacaccactaacagaagcatagagatacattttatacagtgtatgcttg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3159367 |
acgccttcaatctaaaatgtcggtgcgattttatgccctatatatactcatcacaccactaacagaagcatagagatacattttatacagtgtatgcttg |
3159268 |
T |
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| Q |
215 |
ttg |
217 |
Q |
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||| |
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| T |
3159267 |
ttg |
3159265 |
T |
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