View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3485_low_59 (Length: 205)

Name: NF3485_low_59
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3485_low_59
NF3485_low_59
[»] chr8 (4 HSPs)
chr8 (10-205)||(14694706-14694901)
chr8 (93-205)||(12132430-12132542)
chr8 (132-205)||(4362758-4362831)
chr8 (133-205)||(33332317-33332389)
[»] chr7 (7 HSPs)
chr7 (131-205)||(28029719-28029793)
chr7 (131-205)||(36430594-36430668)
chr7 (132-205)||(9901987-9902060)
chr7 (134-199)||(21515991-21516056)
chr7 (141-188)||(18343920-18343967)
chr7 (141-188)||(18344823-18344870)
chr7 (141-188)||(18347449-18347496)
[»] chr4 (7 HSPs)
chr4 (131-205)||(7328084-7328158)
chr4 (131-205)||(29275982-29276056)
chr4 (132-205)||(7984526-7984599)
chr4 (132-205)||(40818919-40818992)
chr4 (133-205)||(42243861-42243933)
chr4 (132-188)||(32270446-32270502)
chr4 (141-191)||(748594-748644)
[»] chr5 (4 HSPs)
chr5 (132-205)||(35885759-35885832)
chr5 (133-205)||(3432374-3432446)
chr5 (133-205)||(16167773-16167845)
chr5 (134-205)||(4630394-4630465)
[»] chr2 (3 HSPs)
chr2 (132-205)||(5246068-5246141)
chr2 (133-205)||(43903880-43903952)
chr2 (155-205)||(44030359-44030409)
[»] chr1 (2 HSPs)
chr1 (132-205)||(31972644-31972717)
chr1 (141-188)||(395468-395515)
[»] chr3 (1 HSPs)
chr3 (141-188)||(45082766-45082813)


Alignment Details
Target: chr8 (Bit Score: 164; Significance: 7e-88; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 10 - 205
Target Start/End: Original strand, 14694706 - 14694901
Alignment:
Q  10 gtgttcatagtaacaaagagaagataaaaactagctaaggtaatacgcattttcggaaataatgaaaataggtcttttaacggtctcttttttctttaat 109  Q
    |||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14694706 gtgttcattgtaacaaagagaagataaaaactagctaaggtgatatgcattttcggaaataatgaaaataggtcttttaacggtctcttttttgtttaat 14694805  T
Q  110 gacaagtaaaaccaacacaaccaagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  14694806 gacaagtaacatcaacacaaccaagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 14694901  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 12132430 - 12132542
Alignment:
Q  93 tctcttttttctttaatgacaagtaaaaccaacacaaccaagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgag 192  Q
    |||| ||| |||||| | |||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  12132430 tctcctttctctttattaacaagtgaaacaaaaacaaccaagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgag 12132529  T
Q  193 ccccacgatgggc 205  Q
    ||||||| |||||    
T  12132530 ccccacggtgggc 12132542  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 4362831 - 4362758
Alignment:
Q  132 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  4362831 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 4362758  T

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Target: chr8; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 33332389 - 33332317
Alignment:
Q  133 agcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  33332389 agcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 33332317  T

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Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 28029793 - 28029719
Alignment:
Q  131 caagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  28029793 caagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 28029719  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 36430668 - 36430594
Alignment:
Q  131 caagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  36430668 caagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 36430594  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 9901987 - 9902060
Alignment:
Q  132 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  9901987 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 9902060  T

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Target: chr7; HSP #4
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 21515991 - 21516056
Alignment:
Q  134 gcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21515991 gcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacg 21516056  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 18343920 - 18343967
Alignment:
Q  141 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtt 188  Q
    |||||||| |||||||||||| |||| |||||| ||||||||||||||    
T  18343920 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggtt 18343967  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 18344823 - 18344870
Alignment:
Q  141 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtt 188  Q
    |||||||| |||||||||||| |||| |||||| ||||||||||||||    
T  18344823 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggtt 18344870  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 18347449 - 18347496
Alignment:
Q  141 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtt 188  Q
    |||||||| |||||||||||| |||| |||||| ||||||||||||||    
T  18347449 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggtt 18347496  T

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Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 7328158 - 7328084
Alignment:
Q  131 caagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  7328158 caagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 7328084  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 29276056 - 29275982
Alignment:
Q  131 caagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  29276056 caagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 29275982  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 7984526 - 7984599
Alignment:
Q  132 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  7984526 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 7984599  T

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Target: chr4; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 40818992 - 40818919
Alignment:
Q  132 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  40818992 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 40818919  T

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Target: chr4; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 42243861 - 42243933
Alignment:
Q  133 agcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  42243861 agcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 42243933  T

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Target: chr4; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 32270446 - 32270502
Alignment:
Q  132 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtt 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32270446 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtt 32270502  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 748594 - 748644
Alignment:
Q  141 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttga 191  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||||||    
T  748594 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggtttga 748644  T

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Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 35885832 - 35885759
Alignment:
Q  132 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  35885832 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 35885759  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 3432374 - 3432446
Alignment:
Q  133 agcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  3432374 agcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 3432446  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 16167773 - 16167845
Alignment:
Q  133 agcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  16167773 agcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 16167845  T

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Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 4630394 - 4630465
Alignment:
Q  134 gcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  4630394 gcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 4630465  T

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Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 5246068 - 5246141
Alignment:
Q  132 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  5246068 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 5246141  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 43903952 - 43903880
Alignment:
Q  133 agcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  43903952 agcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 43903880  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 44030359 - 44030409
Alignment:
Q  155 gagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  44030359 gagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 44030409  T

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Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 31972717 - 31972644
Alignment:
Q  132 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtttgagccccacgatgggc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  31972717 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggc 31972644  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 395515 - 395468
Alignment:
Q  141 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtt 188  Q
    |||||||| |||||||||||| |||| |||||| ||||||||||||||    
T  395515 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggtt 395468  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 45082813 - 45082766
Alignment:
Q  141 tagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggtt 188  Q
    |||||||| |||||||||||| |||| |||||| ||||||||||||||    
T  45082813 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggtt 45082766  T

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