View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3485_low_8 (Length: 460)
Name: NF3485_low_8
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3485_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 54986117 - 54985670
Alignment:
| Q |
1 |
gagagacaagcatagtagttcattccactaacagacattcctttcattcccttctttgagaatatattcctaaacacaaaggccacattggatatcatag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54986117 |
gagagacaagcatagtagttcattccactaacagacattcctttcattcccttctttgagaatatattcctaaacacaaaggccacattggatatcatag |
54986018 |
T |
|
| Q |
101 |
cccccataaaccctgaaacgtagataagatcagtcaaacaaaatacagattcagcatccaatatcacctcaatctactatgatagaagaacacaatcagc |
200 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
54986017 |
cccccataaaccctgaaacatagataagatcagtcaaacaaaatacagattcagcatcctatatcaactcaatctactatgatagaagaacacaatcagc |
54985918 |
T |
|
| Q |
201 |
atctgaaaatcaaccatgtaaat-----aagtgaatgtagtcttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataa |
295 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54985917 |
atctgaaaatcaaccatgtaaattaaataagtgaatgtagtcttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataa |
54985818 |
T |
|
| Q |
296 |
ttggtagtagtgaaaggtaaacttgtaaagggaacgcttcaccaagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtg |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54985817 |
ttggtagtagtgaaaggtaaacttgtaaagggaacgcttcaccaagcaagaattttgatacaagaacactgaaagcaggttctccacttttgattatgtg |
54985718 |
T |
|
| Q |
396 |
tgtaaatgaaactgcaactttggacatactcacagtagccgcaacatg |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54985717 |
tgtaaatgaaactgcaactttggacatactcacagtagccgcaacatg |
54985670 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 239 - 443
Target Start/End: Complemental strand, 7883437 - 7883233
Alignment:
| Q |
239 |
taccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcacc |
338 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||| | | ||| ||||||||| | | |||||| ||||| || |
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|
| T |
7883437 |
taccaatcatattgaaattgagttctgttacagcagctagtgcacaaccaccaattattggcaacaatgagaggtaaactggcatagggaatgcttctcc |
7883338 |
T |
|
| Q |
339 |
aagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgca |
438 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||||||||||| ||||| ||||| || ||||||||||| |||||||||||||||||||| || ||| |
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| T |
7883337 |
aagcaagaatcttgatactagcacactgaaagctggttctccactcttgatgatgtgagtgaatgaaactgctactttggacatactcacagttgcagca |
7883238 |
T |
|
| Q |
439 |
acatg |
443 |
Q |
| |
|
||||| |
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|
| T |
7883237 |
acatg |
7883233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 7883625 - 7883510
Alignment:
| Q |
4 |
agacaagcatagtagttcattccactaacagacattcctttcattcccttctttgagaatatattcctaaacacaaaggccacattggatatcatagccc |
103 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||| |||| ||| ||||||||||| | |
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|
| T |
7883625 |
agacaagcataatagttcattccactaacactcattccattcattcctttctttgagaatatattcctaaatacaaatgccaaatttgatatcatagctc |
7883526 |
T |
|
| Q |
104 |
ccataaaccctgaaac |
119 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
7883525 |
ccataaatcctgaaac |
7883510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 18396645 - 18396534
Alignment:
| Q |
6 |
acaagcatagtagttcattccactaacagacattcctttcattcccttctttgagaatatattcctaaacacaaaggccacattggatatcatagccccc |
105 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||| ||||| ||||| || ||||| || || | |||||||| |||| ||| ||||||||||||||| |
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|
| T |
18396645 |
acaagcatagtaattcattccactaacagactttcccttcatcccctttttcgagaagatgttgcggaacacaaatgccagatttgatatcatagccccc |
18396546 |
T |
|
| Q |
106 |
ataaaccctgaa |
117 |
Q |
| |
|
||||| |||||| |
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|
| T |
18396545 |
ataaaacctgaa |
18396534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 443
Target Start/End: Complemental strand, 18396224 - 18396019
Alignment:
| Q |
238 |
ttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcac |
337 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||||||||| || ||||| ||||| | || || || || ||| | | ||||| | ||||| |
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|
| T |
18396224 |
ttaccaatcatattgaaattgagttcagtcacagcagcaagtgcacatccaccaatgattggaattaaagacagatagactggcacggggaaggtttcac |
18396125 |
T |
|
| Q |
338 |
caagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgc |
437 |
Q |
| |
|
| | | ||||| || || |||||||| |||||||| || ||||| ||||| || |||||||| || || || |||||||||||||| || |||||||| |
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|
| T |
18396124 |
ccaagataaatctcgaaaccagaacactaaaagcaggctcgccactcttgatgatatgtgtaaacgacacagccactttggacatactaaccgtagccgc |
18396025 |
T |
|
| Q |
438 |
aacatg |
443 |
Q |
| |
|
||||| |
|
|
| T |
18396024 |
gacatg |
18396019 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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