View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3485_low_9 (Length: 452)

Name: NF3485_low_9
Description: NF3485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3485_low_9
NF3485_low_9
[»] chr8 (18 HSPs)
chr8 (142-420)||(278802-279080)
chr8 (142-420)||(636772-637050)
chr8 (142-420)||(822575-822853)
chr8 (7-150)||(276429-276576)
chr8 (7-150)||(639273-639420)
chr8 (7-150)||(825079-825226)
chr8 (7-110)||(10865547-10865651)
chr8 (19-110)||(18189544-18189636)
chr8 (294-375)||(2623231-2623312)
chr8 (306-383)||(13231823-13231900)
chr8 (267-358)||(41456066-41456157)
chr8 (271-378)||(35558-35665)
chr8 (319-385)||(279736-279802)
chr8 (319-385)||(636050-636116)
chr8 (319-385)||(821853-821919)
chr8 (306-385)||(13231492-13231571)
chr8 (294-385)||(33231130-33231221)
chr8 (323-381)||(30204188-30204245)
[»] chr1 (11 HSPs)
chr1 (7-110)||(43805744-43805848)
chr1 (267-409)||(25476032-25476174)
chr1 (294-384)||(27702583-27702673)
chr1 (292-355)||(28651705-28651768)
chr1 (319-397)||(44633342-44633420)
chr1 (296-397)||(48621150-48621251)
chr1 (306-406)||(48621820-48621920)
chr1 (7-88)||(20424552-20424634)
chr1 (319-397)||(28652427-28652505)
chr1 (306-385)||(44634034-44634113)
chr1 (319-401)||(51795631-51795713)
[»] chr4 (12 HSPs)
chr4 (7-110)||(21408018-21408122)
chr4 (306-418)||(50071965-50072077)
chr4 (299-381)||(26305564-26305646)
chr4 (306-385)||(12007491-12007570)
chr4 (300-360)||(39631387-39631447)
chr4 (306-355)||(12007919-12007968)
chr4 (294-385)||(2486923-2487015)
chr4 (315-385)||(50071290-50071360)
chr4 (325-398)||(5473162-5473234)
chr4 (314-371)||(54628465-54628522)
chr4 (306-358)||(5474862-5474914)
chr4 (306-358)||(32641205-32641257)
[»] chr2 (8 HSPs)
chr2 (265-409)||(35063603-35063747)
chr2 (267-378)||(38356835-38356946)
chr2 (299-385)||(35064389-35064475)
chr2 (330-378)||(19601539-19601587)
chr2 (59-142)||(21267060-21267148)
chr2 (269-358)||(40056313-40056402)
chr2 (271-418)||(1299968-1300113)
chr2 (321-381)||(29453620-29453680)
[»] chr3 (8 HSPs)
chr3 (268-409)||(45004704-45004845)
chr3 (307-379)||(50766026-50766098)
chr3 (319-385)||(45145903-45145969)
chr3 (279-375)||(45005504-45005600)
chr3 (293-385)||(45146663-45146755)
chr3 (294-386)||(51489821-51489913)
chr3 (319-385)||(55350408-55350474)
chr3 (299-379)||(35744509-35744589)
[»] chr5 (12 HSPs)
chr5 (7-110)||(20424417-20424521)
chr5 (292-385)||(24153215-24153308)
chr5 (322-418)||(17115753-17115849)
chr5 (294-385)||(24153943-24154034)
chr5 (325-383)||(29108704-29108762)
chr5 (8-107)||(29170827-29170927)
chr5 (315-382)||(17116461-17116528)
chr5 (319-385)||(35145615-35145681)
chr5 (319-361)||(29265223-29265265)
chr5 (306-383)||(29264658-29264735)
chr5 (306-350)||(29108123-29108166)
chr5 (313-377)||(40816249-40816313)
[»] scaffold0604 (1 HSPs)
scaffold0604 (7-94)||(3867-3955)
[»] chr7 (7 HSPs)
chr7 (7-75)||(49046449-49046517)
chr7 (6-73)||(26473503-26473570)
chr7 (6-73)||(26549943-26550010)
chr7 (321-386)||(21516661-21516726)
chr7 (321-397)||(4833162-4833238)
chr7 (321-368)||(21516215-21516262)
chr7 (321-368)||(21516438-21516485)
[»] chr6 (3 HSPs)
chr6 (297-386)||(30921571-30921660)
chr6 (294-368)||(19109586-19109660)
chr6 (271-418)||(26670623-26670768)
[»] scaffold0301 (2 HSPs)
scaffold0301 (326-397)||(7855-7926)
scaffold0301 (322-378)||(6473-6529)
[»] scaffold0119 (1 HSPs)
scaffold0119 (271-418)||(26-171)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 142 - 420
Target Start/End: Original strand, 278802 - 279080
Alignment:
Q  142 cacaaattatctctttcaatgttcatacttcattttattaattaatgaggtgatctaagtgattaatgacacacactcgtacttgtgttgcaagaatatc 241  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  278802 cacaaattatctctttcattgttcatacttcattttattaattaatgaggtgatctaagtgattaatgacacacactcgtacttgtgttgcaagaatatc 278901  T
Q  242 cctctatagttatctcatttatatatagggaaaataacattcacctcttgtgaggtctattaagatgacactgacatcccctctagttttaaaacttaca 341  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  278902 cctctatagttatctcatttatatatagggaaaataacattcatctcttgtgaggtctattaagatgacactgacatcccctttagttttaaaacttaca 279001  T
Q  342 ctaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaacactgttgattttccttcaattttaa 420  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  279002 ttaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaacactgttaattttccttcaattttaa 279080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 142 - 420
Target Start/End: Complemental strand, 637050 - 636772
Alignment:
Q  142 cacaaattatctctttcaatgttcatacttcattttattaattaatgaggtgatctaagtgattaatgacacacactcgtacttgtgttgcaagaatatc 241  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  637050 cacaaattatctctttcattgttcatacttcattttattaattaatgaggtgatctaagtgattaatgacacacactcgtacttgtgttgcaagaatatc 636951  T
Q  242 cctctatagttatctcatttatatatagggaaaataacattcacctcttgtgaggtctattaagatgacactgacatcccctctagttttaaaacttaca 341  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  636950 cctctatagttatctcatttatatatagggaaaataacattcatctcttgtgaggtctattaagatgacactgacatcccctttagttttaaaacttaca 636851  T
Q  342 ctaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaacactgttgattttccttcaattttaa 420  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  636850 ttaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaacactgttaattttccttcaattttaa 636772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 142 - 420
Target Start/End: Complemental strand, 822853 - 822575
Alignment:
Q  142 cacaaattatctctttcaatgttcatacttcattttattaattaatgaggtgatctaagtgattaatgacacacactcgtacttgtgttgcaagaatatc 241  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  822853 cacaaattatctctttcattgttcatacttcattttattaattaatgaggtgatctaagtgattaatgacacacactcgtacttgtgttgcaagaatatc 822754  T
Q  242 cctctatagttatctcatttatatatagggaaaataacattcacctcttgtgaggtctattaagatgacactgacatcccctctagttttaaaacttaca 341  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  822753 cctctatagttatctcatttatatatagggaaaataacattcatctcttgtgaggtctattaagatgacactgacatcccctttagttttaaaacttaca 822654  T
Q  342 ctaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaacactgttgattttccttcaattttaa 420  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  822653 ttaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaacactgttaattttccttcaattttaa 822575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 276429 - 276576
Alignment:
Q  7 acaatgatccgatgaatgaccaatagaattataaatgaaacaaaagtatggtggatgttaatactcaattcaatgtcaaaagcgaaattatctctttcaa 106  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  276429 acaatgatccgatgaatgaccaatagaattatagatgaaacaaaagtatggtggatgttcatactcaattcaatgtcaaaagcaaaattatctctttcaa 276528  T
Q  107 caca-agag---cagaaataaatccggcaaaattgatatcacaaatta 150  Q
    |||| ||||   ||||||||||| ||||||||||||||||||||||||    
T  276529 cacacagagtatcagaaataaattcggcaaaattgatatcacaaatta 276576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 639420 - 639273
Alignment:
Q  7 acaatgatccgatgaatgaccaatagaattataaatgaaacaaaagtatggtggatgttaatactcaattcaatgtcaaaagcgaaattatctctttcaa 106  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  639420 acaatgatccgatgaatgaccaatagaattatagatgaaacaaaagtatggtggatgttcatactcaattcaatgtcaaaagcaaaattatctctttcaa 639321  T
Q  107 caca-agag---cagaaataaatccggcaaaattgatatcacaaatta 150  Q
    |||| ||||   ||||||||||| ||||||||||||||||||||||||    
T  639320 cacacagagtatcagaaataaattcggcaaaattgatatcacaaatta 639273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 825226 - 825079
Alignment:
Q  7 acaatgatccgatgaatgaccaatagaattataaatgaaacaaaagtatggtggatgttaatactcaattcaatgtcaaaagcgaaattatctctttcaa 106  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  825226 acaatgatccgatgaatgaccaatagaattatagatgaaacaaaagtatggtggatgttcatactcaattcaatgtcaaaagcaaaattatctctttcaa 825127  T
Q  107 caca-agag---cagaaataaatccggcaaaattgatatcacaaatta 150  Q
    |||| ||||   ||||||||||| ||||||||||||||||||||||||    
T  825126 cacacagagtatcagaaataaattcggcaaaattgatatcacaaatta 825079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 10865651 - 10865547
Alignment:
Q  7 acaatgatccgatgaatgaccaatagaattataaatgaaacaaaagtatggtggatgttaatactcaat-tcaatgtcaaaagcgaaattatctctttca 105  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||  |||||| ||||||||| ||||||||||| || |||||||||||||||    
T  10865651 acaatgatccgatgaatgaccaatagaattacaagtgaaacaaaagtatggatgatgttcatactcaatctcaatgtcaaaggcaaaattatctctttca 10865552  T
Q  106 acaca 110  Q
    |||||    
T  10865551 acaca 10865547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 18189544 - 18189636
Alignment:
Q  19 tgaatgaccaatagaattataaatgaaacaaaagtatggtggatgttaatactcaat-tcaatgtcaaaagcgaaattatctctttcaacaca 110  Q
    ||||||||||||||||||| || |||||||||||||||| ||||| | ||||||||| |||||||||||||  ||||||||||||||||||||    
T  18189544 tgaatgaccaatagaattacaagtgaaacaaaagtatggaggatgctcatactcaatctcaatgtcaaaagaaaaattatctctttcaacaca 18189636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 2623312 - 2623231
Alignment:
Q  294 aggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaa 375  Q
    |||| |||||| |||||||||||||||| |||| |||||||||||||||||| ||||||| |||||| ||||||| ||||||    
T  2623312 aggtttattaaaatgacactgacatcccatctaattttaaaacttacactaacctcccttgagttttcatcaaatagacaaa 2623231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 383
Target Start/End: Complemental strand, 13231900 - 13231823
Alignment:
Q  306 atgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccc 383  Q
    |||||||||||| |||||||| |||||||||||||||||| ||||||| |||| | |||||||  |||||||||||||    
T  13231900 atgacactgacaccccctctaattttaaaacttacactaacctccctttagttctcatcaaatgcacaaacacctccc 13231823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 267 - 358
Target Start/End: Complemental strand, 41456157 - 41456066
Alignment:
Q  267 tagggaaaataacattcacctcttgtgaggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtt 358  Q
    |||||| ||| ||| |||||||   |||||||||| || |||||||||||||| |||||| |||| ||||||||||||| ||||||||||||    
T  41456157 tagggataattacactcacctcccctgaggtctatgaaaatgacactgacatctcctctaatttttaaacttacactaacctcccttaagtt 41456066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 378
Target Start/End: Original strand, 35558 - 35665
Alignment:
Q  271 gaaaataacattcacctcttgtgaggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattg 370  Q
    |||||| ||||||| |||   |||| |||||||| |||||||  ||| ||  | ||||||||||||||||| ||| || |||||||||||||||||||      
T  35558 gaaaattacattcatctcccatgagatctattaatatgacacaaacaccctttttagttttaaaacttacattaaccttccttaagtttttatcaaatat 35657  T
Q  371 acaaacac 378  Q
    ||||||||    
T  35658 acaaacac 35665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 385
Target Start/End: Complemental strand, 279802 - 279736
Alignment:
Q  319 cccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccctt 385  Q
    |||||||| ||||||||||||| |||| |||| ||||||||| ||||| | || |||||||||||||    
T  279802 cccctctaattttaaaacttacgctaacctcctttaagttttcatcaattagaaaaacacctccctt 279736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 385
Target Start/End: Original strand, 636050 - 636116
Alignment:
Q  319 cccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccctt 385  Q
    |||||||| ||||||||||||| |||| |||| ||||||||| ||||| | || |||||||||||||    
T  636050 cccctctaattttaaaacttacgctaacctcctttaagttttcatcaattagaaaaacacctccctt 636116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 385
Target Start/End: Original strand, 821853 - 821919
Alignment:
Q  319 cccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccctt 385  Q
    |||||||| ||||||||||||| |||| |||| ||||||||| ||||| | || |||||||||||||    
T  821853 cccctctaattttaaaacttacgctaacctcctttaagttttcatcaattagaaaaacacctccctt 821919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 385
Target Start/End: Original strand, 13231492 - 13231571
Alignment:
Q  306 atgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccctt 385  Q
    |||||||| |||||| || || ||||||||||| |||||| ||||||| |||| || | |||| |||| |||||||||||    
T  13231492 atgacacttacatcctctttaattttaaaactttcactaacctccctttagttctttttaaatagacacacacctccctt 13231571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 385
Target Start/End: Original strand, 33231130 - 33231221
Alignment:
Q  294 aggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccctt 385  Q
    ||||||||||| ||||||||  ||||||||||| ||||||||| | ||  || ||||||| |||||| |||| || ||| || |||||||||    
T  33231130 aggtctattaaaatgacactagcatcccctctaattttaaaacatgcataaacctccctttagttttcatcatatagactaaaacctccctt 33231221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 30204188 - 30204245
Alignment:
Q  323 tctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctc 381  Q
    |||||||| |||||||||||||| || |||||||||||||||||||  | |||||||||    
T  30204188 tctagtttaaaaacttacactaacct-ccttaagtttttatcaaataaataaacacctc 30204245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 43805744 - 43805848
Alignment:
Q  7 acaatgatccgatgaatgaccaatagaattataaatgaaacaaaagtatggtggatgttaatactcaat-tcaatgtcaaaagcgaaattatctctttca 105  Q
    |||||||||||| |||||||||||||||||| || | |||||||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||    
T  43805744 acaatgatccgaggaatgaccaatagaattacaagtaaaacaaaagtatggaggatgttcatactcaatctcaatgtcaaaagcaaaattatctctttca 43805843  T
Q  106 acaca 110  Q
    |||||    
T  43805844 acaca 43805848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 267 - 409
Target Start/End: Complemental strand, 25476174 - 25476032
Alignment:
Q  267 tagggaaaataacattcacctcttgtgaggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaa 366  Q
    ||||| |||| |||||||||||   |||||| |||||| ||||||||||||  ||||||||||||||||||||||| || |||||| |||||||||| ||    
T  25476174 taggggaaattacattcacctcccctgaggtttattaaaatgacactgacactccctctagttttaaaacttacacgaacctccctcaagtttttatgaa 25476075  T
Q  367 attgacaaacacctcccttcactattaacactgttgattttcc 409  Q
    ||  |||||||||||||||  |||||||||| ||| |||||||    
T  25476074 ataaacaaacacctcccttatctattaacaccgttaattttcc 25476032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 294 - 384
Target Start/End: Original strand, 27702583 - 27702673
Alignment:
Q  294 aggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccct 384  Q
    |||| |||||| ||||||||||||||| || || |||||||| |||||||||  |||||| |||||||||||||| |||||||||||||||    
T  27702583 aggtttattaaaatgacactgacatccactataattttaaaatttacactaacttcccttgagtttttatcaaatagacaaacacctccct 27702673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 28651705 - 28651768
Alignment:
Q  292 tgaggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaa 355  Q
    ||||||||||||| |||||||||||| |||||||| |||||||||||||| ||| |||||||||    
T  28651705 tgaggtctattaaaatgacactgacaccccctctatttttaaaacttacattaacctcccttaa 28651768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 397
Target Start/End: Original strand, 44633342 - 44633420
Alignment:
Q  319 cccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaacac 397  Q
    ||||| ||||||||||||||||||||| |||||||||||  || |||||| |||||| |||||||||  ||||||||||    
T  44633342 cccctttagttttaaaacttacactaacctcccttaagtaattttcaaatagacaaatacctcccttttctattaacac 44633420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 397
Target Start/End: Original strand, 48621150 - 48621251
Alignment:
Q  296 gtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaac 395  Q
    ||||||| | || ||||||||| ||||||||||||||||  ||||| |||||||||||||||| | ||  ||| ||||||||| |||| ||| |||||||    
T  48621150 gtctattgaaatcacactgacaccccctctagttttaaattttacattaatctcccttaagttatcatgtaatagacaaacacatcccctcattattaac 48621249  T
Q  396 ac 397  Q
    ||    
T  48621250 ac 48621251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 406
Target Start/End: Complemental strand, 48621920 - 48621820
Alignment:
Q  306 atgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaacactgttgatt 405  Q
    |||||||  ||| ||||| |||||| ||||| |||||||| ||||||||||||||| |  |||  |||| |||||||||||||||||||||| ||| |||    
T  48621920 atgacaccaacaccccctttagtttaaaaacatacactaacctcccttaagtttttttgtaatacacaatcacctcccttcactattaacacagttaatt 48621821  T
Q  406 t 406  Q
    |    
T  48621820 t 48621820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 20424634 - 20424552
Alignment:
Q  7 acaatgatccgatgaatgaccaatagaattataaatgaaacaaaagtatggtggatgttaatactcaat-tcaatgtcaaaag 88  Q
    ||||||||||| ||||||||||||||||||  || |||||||| ||||||| |||| || ||||||||| ||||| |||||||    
T  20424634 acaatgatccgttgaatgaccaatagaattgcaagtgaaacaatagtatggaggattttcatactcaatctcaatttcaaaag 20424552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 319 - 397
Target Start/End: Complemental strand, 28652505 - 28652427
Alignment:
Q  319 cccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaacac 397  Q
    |||||||| |||||||||||||||||| ||||||||| ||||||| |||| ||| ||||  ||||||| || |||||||    
T  28652505 cccctctatttttaaaacttacactaacctcccttaaatttttataaaatagactaacaattcccttctctcttaacac 28652427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 385
Target Start/End: Complemental strand, 44634113 - 44634034
Alignment:
Q  306 atgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccctt 385  Q
    |||||| ||||| ||||||||||||||||||  | || || |||||||||||| | |||||||  |||| ||||||||||    
T  44634113 atgacattgacaccccctctagttttaaaacaaataccaacctcccttaagttctcatcaaatatacaatcacctccctt 44634034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 51795631 - 51795713
Alignment:
Q  319 cccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaacactgtt 401  Q
    |||||||||||||||||  || ||||| ||||| |||||| |||| |||| |||||| || |||||||   ||||||||||||    
T  51795631 cccctctagttttaaaatatatactaacctcccctaagttcttattaaatagacaaagacatcccttcttcattaacactgtt 51795713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 21408122 - 21408018
Alignment:
Q  7 acaatgatccgatgaatgaccaatagaattataaatgaaacaaaagtatggtggatgttaatactcaat-tcaatgtcaaaagcgaaattatctctttca 105  Q
    ||||||||||||||||||||||||||||||| || |||| ||||||||||| ||||||| ||||||||| |||||||||||| | ||||||||||||| |    
T  21408122 acaatgatccgatgaatgaccaatagaattacaagtgaaccaaaagtatggaggatgttcatactcaatctcaatgtcaaaatcaaaattatctctttga 21408023  T
Q  106 acaca 110  Q
    |||||    
T  21408022 acaca 21408018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 306 - 418
Target Start/End: Complemental strand, 50072077 - 50071965
Alignment:
Q  306 atgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaacactgttgatt 405  Q
    |||||||| ||| ||||| |||||||||||||||||| || |||||||||||| | |||||||  ||||||| ||||||||  |||||||| |||| |||    
T  50072077 atgacactaacaccccctttagttttaaaacttacacaaacctcccttaagttctcatcaaatatacaaacatctcccttccatattaacaatgttaatt 50071978  T
Q  406 ttccttcaatttt 418  Q
    |||| | ||||||    
T  50071977 ttccgttaatttt 50071965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 26305564 - 26305646
Alignment:
Q  299 tattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctc 381  Q
    |||||| ||||||| |||| | |||||| |||||||||||||| ||||||||| ||| |||||||||||| ||||||||||||    
T  26305564 tattaaaatgacaccgacacctcctctaattttaaaacttacattaatctcccataaatttttatcaaatggacaaacacctc 26305646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 306 - 385
Target Start/End: Original strand, 12007491 - 12007570
Alignment:
Q  306 atgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccctt 385  Q
    |||||||||||| |||||||||||||||||| |||| ||| ||| |||||||| | |||||||  |||||||||||||||    
T  12007491 atgacactgacaccccctctagttttaaaacatacattaacctcacttaagttctcatcaaatacacaaacacctccctt 12007570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 39631447 - 39631387
Alignment:
Q  300 attaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttt 360  Q
    ||||| |||| | |||||||||||||| |||||||||||||| ||||||||||||||||||    
T  39631447 attaaaatgatattgacatcccctctatttttaaaacttacaataatctcccttaagtttt 39631387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 12007968 - 12007919
Alignment:
Q  306 atgacactgacatcccctctagttttaaaacttacactaatctcccttaa 355  Q
    |||||||||||| |||||||| |||||||||||||||||| |||||||||    
T  12007968 atgacactgacaccccctctaattttaaaacttacactaacctcccttaa 12007919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 385
Target Start/End: Complemental strand, 2487015 - 2486923
Alignment:
Q  294 aggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctccc-ttaagtttttatcaaattgacaaacacctccctt 385  Q
    ||||||||||| | |||||||||| ||| ||||||||||||||| |||||||| |||| ||||| | | ||||||   |||||||||||||||    
T  2487015 aggtctattaaaacgacactgacaccccttctagttttaaaactaacactaatgtccctttaagctctcatcaaaaatacaaacacctccctt 2486923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 385
Target Start/End: Original strand, 50071290 - 50071360
Alignment:
Q  315 acatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccctt 385  Q
    ||||||| ||||||||||||| | ||||||| |||||||||| ||| |||||||  |||||||| ||||||    
T  50071290 acatcccttctagttttaaaattaacactaacctcccttaagctttcatcaaatacacaaacacttccctt 50071360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 5473162 - 5473234
Alignment:
Q  325 tagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaacact 398  Q
    |||||||||||||||||| || ||||||||| || || ||||||  |||||| | ||||||| |||||||||||    
T  5473162 tagttttaaaacttacacaaa-ctcccttaaattattgtcaaatacacaaactcttcccttctctattaacact 5473234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 54628465 - 54628522
Alignment:
Q  314 gacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattga 371  Q
    |||| |||||||||||||||||   ||||||| |||||||||||||| || |||||||    
T  54628465 gacaccccctctagttttaaaatcgacactaacctcccttaagttttcattaaattga 54628522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 5474914 - 5474862
Alignment:
Q  306 atgacactgacatcccctctagttttaaaacttacactaatctcccttaagtt 358  Q
    |||||||| ||| |||||||  ||||||||||||||| || ||||||||||||    
T  5474914 atgacactaacaacccctcttattttaaaacttacaccaacctcccttaagtt 5474862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 32641205 - 32641257
Alignment:
Q  306 atgacactgacatcccctctagttttaaaacttacactaatctcccttaagtt 358  Q
    |||||||||||| | |||||| |||||||| |||||||||  |||||||||||    
T  32641205 atgacactgacacctcctctaattttaaaaattacactaacatcccttaagtt 32641257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 265 - 409
Target Start/End: Original strand, 35063603 - 35063747
Alignment:
Q  265 tatagggaaaataacattcacctcttgtgaggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatc 364  Q
    ||||||| |||| ||| |||||||   |||||| |||||| ||| ||||||||  ||||||||||||||||||||||  || |||||||||||||||||     
T  35063603 tataggggaaattacactcacctcccttgaggtttattaaaatgtcactgacactccctctagttttaaaacttacatgaacctcccttaagtttttatg 35063702  T
Q  365 aaattgacaaacacctcccttcactattaacactgttgattttcc 409  Q
    |||| |||||||| |||||||  |||||||||||||| |||||||    
T  35063703 aaatagacaaacatctcccttatctattaacactgttaattttcc 35063747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 267 - 378
Target Start/End: Original strand, 38356835 - 38356946
Alignment:
Q  267 tagggaaaataacattcacctcttgtgaggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaa 366  Q
    |||||||||| ||| |||||||   ||||||||||||| |||||||  ||| |||||||||||||||||| |||| ||| |||||||||||||| |||||    
T  38356835 tagggaaaattacactcacctcccctgaggtctattaatatgacacaaacaccccctctagttttaaaacatacattaacctcccttaagttttaatcaa 38356934  T
Q  367 attgacaaacac 378  Q
    ||  ||||||||    
T  38356935 atatacaaacac 38356946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 385
Target Start/End: Complemental strand, 35064475 - 35064389
Alignment:
Q  299 tattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccctt 385  Q
    |||||| |||||||| ||||||||||||||||||||||| |||||||  |||||||| || | ||||||| || ||| |||||||||    
T  35064475 tattaaaatgacactaacatcccctctagttttaaaactcacactaacttcccttaaattctcatcaaatagataaatacctccctt 35064389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 378
Target Start/End: Original strand, 19601539 - 19601587
Alignment:
Q  330 ttaaaacttacactaatctcccttaagtttttatcaaattgacaaacac 378  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  19601539 ttaaaacttacactaatctcccttaagtttttatcaaatatacaaacac 19601587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 21267148 - 21267060
Alignment:
Q  59 ggatgttaatactcaat-tcaatgtcaaaagcgaaattatctctttcaacaca-agag---cagaaataaatccggcaaaattgatatc 142  Q
    ||||||| ||||||||| |||||||||||||  |||||||||||||||| ||| ||||   ||| ||||||||| ||||||||||||||    
T  21267148 ggatgttcatactcaatctcaatgtcaaaagaaaaattatctctttcaaaacacagagtatcaggaataaatccagcaaaattgatatc 21267060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 40056313 - 40056402
Alignment:
Q  269 gggaaaataacattcacctcttgtgaggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtt 358  Q
    |||||||| ||| |||||||   |||||| ||| || |||||||| ||| ||| |||||||| |||||||||| ||| ||||||||||||    
T  40056313 gggaaaattacactcacctccgctgaggtttatgaaaatgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 40056402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 418
Target Start/End: Original strand, 1299968 - 1300113
Alignment:
Q  271 gaaaataacattcacctcttgtgaggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattg 370  Q
    |||||| ||| ||||||| | ||| || |||||| |||||||  ||| ||| |||||||| |||||| || |||| ||| || | ||| | || |||| |    
T  1299968 gaaaattacactcacctcctttgaagtttattaaaatgacac--acaccccttctagtttcaaaactaacgctaacctctctaatgttctaatgaaatag 1300065  T
Q  371 acaaacacctcccttcactattaacactgttgattttccttcaatttt 418  Q
    ||||||||||||||||  ||||||||| ||| | ||||| ||||||||    
T  1300066 acaaacacctcccttccttattaacaccgttaactttccatcaatttt 1300113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 381
Target Start/End: Complemental strand, 29453680 - 29453620
Alignment:
Q  321 cctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctc 381  Q
    ||||||||||| ||||||||| ||| |||| |||||||||| | |||| ||||||||||||    
T  29453680 cctctagttttgaaacttacattaacctcctttaagtttttttgaaatagacaaacacctc 29453620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 268 - 409
Target Start/End: Original strand, 45004704 - 45004845
Alignment:
Q  268 agggaaaataacattcacctcttgtgaggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaa 367  Q
    ||||||||| ||| ||||||| | |||||| |||||| ||| || ||||| ||||| |||||||||| ||||||  || ||||||||||||||||| |||    
T  45004704 agggaaaattacactcacctcctctgaggtttattaaaatgtcaatgacaccccctttagttttaaatcttacatgaacctcccttaagtttttatgaaa 45004803  T
Q  368 ttgacaaacacctcccttcactattaacactgttgattttcc 409  Q
    | |||||||| |||||||  |||||||||||||| |||||||    
T  45004804 tagacaaacatctcccttatctattaacactgttaattttcc 45004845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 50766026 - 50766098
Alignment:
Q  307 tgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacc 379  Q
    ||||||| ||| |||||||||||| ||||| ||||||||||||||||||||||| ||||| | ||||||||||    
T  50766026 tgacactaacaccccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaacacc 50766098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 385
Target Start/End: Original strand, 45145903 - 45145969
Alignment:
Q  319 cccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccctt 385  Q
    ||||||||||||||||||| |||||||  |||||||||||| ||||||||  |||||||||||||||    
T  45145903 cccctctagttttaaaactaacactaacatcccttaagtttctatcaaataaacaaacacctccctt 45145969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 375
Target Start/End: Complemental strand, 45005600 - 45005504
Alignment:
Q  279 cattcacctcttgtgaggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaa 375  Q
    ||||||||||   |||||| |||||| |||||||| ||||  || |||||||||||||| ||||| |||||||||||||| | ||||||| ||||||    
T  45005600 cattcacctcccttgaggtttattaaaatgacactaacatttccactagttttaaaactcacactgatctcccttaagttctcatcaaatagacaaa 45005504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 385
Target Start/End: Complemental strand, 45146755 - 45146663
Alignment:
Q  293 gaggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccctt 385  Q
    ||||| |||||| |||||||  ||||||| |||| |||||||||| ||||||| |||||||| ||| | || |||| ||||||||||||||||    
T  45146755 gaggtttattaaaatgacacaaacatcccttctaattttaaaactaacactaacctcccttatgttctaatgaaatagacaaacacctccctt 45146663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 386
Target Start/End: Complemental strand, 51489913 - 51489821
Alignment:
Q  294 aggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctcccttc 386  Q
    |||| |||||| ||| |||| ||| |||||||||||||||||   | | ||| |||||||| ||||||| ||||| |||||||||||||||||    
T  51489913 aggtttattaaaatggcactaacaccccctctagttttaaaatgaatattaacctcccttatgtttttaacaaatagacaaacacctcccttc 51489821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 385
Target Start/End: Complemental strand, 55350474 - 55350408
Alignment:
Q  319 cccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccctt 385  Q
    ||||| |||||||||| |  ||||||| ||||||||  || ||||||||| ||||||||||||||||    
T  55350474 cccctttagttttaaatcaaacactaacctcccttactttgttatcaaatggacaaacacctccctt 55350408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 35744589 - 35744509
Alignment:
Q  299 tattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacc 379  Q
    |||||| | |||| |||||||||||||| ||| |||||| ||| ||| ||||||| | |||| |||||||  |||||||||    
T  35744589 tattaaaacgacaatgacatcccctctaatttcaaaactaacattaacctcccttgaattttaatcaaataaacaaacacc 35744509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 20424521 - 20424417
Alignment:
Q  7 acaatgatccgatgaatgaccaatagaattataaatgaaacaaaagtatggtggatgttaatactcaat-tcaatgtcaaaagcgaaattatctctttca 105  Q
    ||||||||||  ||||||||||||||||||| || |||||||||||||||| ||||  | ||||||||| |||||||||||||| |||||| ||||||||    
T  20424521 acaatgatccattgaatgaccaatagaattacaagtgaaacaaaagtatggaggattatcatactcaatctcaatgtcaaaagcaaaattagctctttca 20424422  T
Q  106 acaca 110  Q
    |||||    
T  20424421 acaca 20424417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 385
Target Start/End: Original strand, 24153215 - 24153308
Alignment:
Q  292 tgaggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccctt 385  Q
    ||||||||||||| |||| || |||| || |||||||||||||| | ||||||| |||||||||||| | || |||| ||||||||||||||||    
T  24153215 tgaggtctattaaaatgagacagacacccactctagttttaaaagtaacactaacctcccttaagttctaatgaaatggacaaacacctccctt 24153308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 418
Target Start/End: Original strand, 17115753 - 17115849
Alignment:
Q  322 ctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaacactgttgattttccttcaatttt 418  Q
    ||||||||||||||||||||| || |||||||||||| | |||||||  ||||||| ||||||||  |||||||| |||| ||||||| | ||||||    
T  17115753 ctctagttttaaaacttacaccaacctcccttaagttctcatcaaatatacaaacatctcccttccatattaacaatgttaattttccgttaatttt 17115849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 385
Target Start/End: Complemental strand, 24154034 - 24153943
Alignment:
Q  294 aggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccctt 385  Q
    |||| |||||| |||||| | | | ||||||||||||||||||| ||| ||| ||||||||||||| ||||||||  |||||||||||||||    
T  24154034 aggtttattaaaatgacagttagaccccctctagttttaaaactaacattaacctcccttaagtttctatcaaataaacaaacacctccctt 24153943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 383
Target Start/End: Complemental strand, 29108762 - 29108704
Alignment:
Q  325 tagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccc 383  Q
    ||||||||||||||||||||| ||||||| |||||||| |||||  |||||||||||||    
T  29108762 tagttttaaaacttacactaacctcccttgagtttttaacaaatatacaaacacctccc 29108704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 29170827 - 29170927
Alignment:
Q  8 caatgatccgatgaatgaccaatagaattataaatgaaacaaaagtatggtggatgttaatactcaat-tcaatgtcaaaagcgaaattatctctttcaa 106  Q
    |||||||| || ||||| |||||||||||  || |||||||||||||||| |  |||| ||||||||| |||||||||||||  || || ||||||||||    
T  29170827 caatgatcagaagaatggccaatagaattgcaagtgaaacaaaagtatggcgattgttcatactcaatctcaatgtcaaaagaaaacttttctctttcaa 29170926  T
Q  107 c 107  Q
    |    
T  29170927 c 29170927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 382
Target Start/End: Complemental strand, 17116528 - 17116461
Alignment:
Q  315 acatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctcc 382  Q
    ||||||| ||||||||||||||| ||||||| |||| ||||| ||| |||||||  ||||||||||||    
T  17116528 acatcccttctagttttaaaactaacactaacctcctttaagctttcatcaaatacacaaacacctcc 17116461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 385
Target Start/End: Original strand, 35145615 - 35145681
Alignment:
Q  319 cccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccctt 385  Q
    ||||||||||||||||||||||||||| ||||||  |||| | || |||| ||||||||| ||||||    
T  35145615 cccctctagttttaaaacttacactaacctccctcgagttctcataaaatagacaaacacatccctt 35145681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 361
Target Start/End: Complemental strand, 29265265 - 29265223
Alignment:
Q  319 cccctctagttttaaaacttacactaatctcccttaagttttt 361  Q
    ||||||||||||||||||||||||||| |||||  ||||||||    
T  29265265 cccctctagttttaaaacttacactaacctcccacaagttttt 29265223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 383
Target Start/End: Original strand, 29264658 - 29264735
Alignment:
Q  306 atgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctccc 383  Q
    |||| ||| |||||| || ||||||||||||||| | ||| ||||||| |||||||  |||||  |||||||||||||    
T  29264658 atgatactaacatccactttagttttaaaacttatagtaacctcccttgagtttttcacaaatatacaaacacctccc 29264735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 29108123 - 29108166
Alignment:
Q  306 atgacactgacatcccctctagttttaaaacttacactaatctcc 350  Q
    |||||||| ||| ||||||||||||||||||||||||||| ||||    
T  29108123 atgacactaaca-cccctctagttttaaaacttacactaacctcc 29108166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 377
Target Start/End: Original strand, 40816249 - 40816313
Alignment:
Q  313 tgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaaca 377  Q
    |||| ||||||||||||||||||   ||| ||| |||||||||||||| ||| ||| ||||||||    
T  40816249 tgacttcccctctagttttaaaataaacattaacctcccttaagttttcatctaatagacaaaca 40816313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 3955 - 3867
Alignment:
Q  7 acaatgatccgatgaatgaccaatagaattataaatgaaacaaaagtatggtggatgttaatactcaat-tcaatgtcaaaagcgaaat 94  Q
    ||||||||||| ||||||||||||||||||| || |||||||||||||||||||||| | ||| ||||| |||||||||||||| ||||    
T  3955 acaatgatccgttgaatgaccaatagaattacaagtgaaacaaaagtatggtggatgctcatagtcaatctcaatgtcaaaagcaaaat 3867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 49046517 - 49046449
Alignment:
Q  7 acaatgatccgatgaatgaccaatagaattataaatgaaacaaaagtatggtggatgttaatactcaat 75  Q
    |||||||| ||||||||| |||||||||||| || |||||||||||||||||||||||| |||||||||    
T  49046517 acaatgattcgatgaatggccaatagaattacaagtgaaacaaaagtatggtggatgttcatactcaat 49046449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 26473570 - 26473503
Alignment:
Q  6 gacaatgatccgatgaatgaccaatagaattataaatgaaacaaaagtatggtggatgttaatactca 73  Q
    ||||||||||||| ||||||||||| |||||| || |||||||||||||||| ||||||| |||||||    
T  26473570 gacaatgatccgaggaatgaccaattgaattacaagtgaaacaaaagtatggcggatgttcatactca 26473503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 26550010 - 26549943
Alignment:
Q  6 gacaatgatccgatgaatgaccaatagaattataaatgaaacaaaagtatggtggatgttaatactca 73  Q
    ||||||||||||| ||||||||||| |||||| || |||||||||||||||| ||||||| |||||||    
T  26550010 gacaatgatccgaggaatgaccaattgaattacaagtgaaacaaaagtatggcggatgttcatactca 26549943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 386
Target Start/End: Original strand, 21516661 - 21516726
Alignment:
Q  321 cctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctcccttc 386  Q
    |||||||||||||||  ||||||||||||||||||||| ||||||||| || ||| | ||||||||    
T  21516661 cctctagttttaaaatatacactaatctcccttaagttcttatcaaatagagaaagagctcccttc 21516726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 397
Target Start/End: Complemental strand, 4833238 - 4833162
Alignment:
Q  321 cctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaacac 397  Q
    ||||||||||||||||||||||||| || ||||||||||| |||||||  ||||||  || |||||  |||||||||    
T  4833238 cctctagttttaaaacttacactaaccttccttaagttttaatcaaatatacaaacgacttccttccatattaacac 4833162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 368
Target Start/End: Original strand, 21516215 - 21516262
Alignment:
Q  321 cctctagttttaaaacttacactaatctcccttaagtttttatcaaat 368  Q
    |||||||||||||||  ||||||||||||||||||||| |||||||||    
T  21516215 cctctagttttaaaatatacactaatctcccttaagttcttatcaaat 21516262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 368
Target Start/End: Original strand, 21516438 - 21516485
Alignment:
Q  321 cctctagttttaaaacttacactaatctcccttaagtttttatcaaat 368  Q
    |||||||||||||||  ||||||||||||||||||||| |||||||||    
T  21516438 cctctagttttaaaatatacactaatctcccttaagttcttatcaaat 21516485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 386
Target Start/End: Complemental strand, 30921660 - 30921571
Alignment:
Q  297 tctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctcccttc 386  Q
    |||||||| |||||||| | |||||||||||||||||||| |||| ||| |||||||||||| | |||| || ||| |||||||||||||    
T  30921660 tctattaaaatgacactaaaatcccctctagttttaaaacatacaataaactcccttaagttctaatcatatagactaacacctcccttc 30921571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 19109660 - 19109586
Alignment:
Q  294 aggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaat 368  Q
    |||||||| || || ||| |||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||    
T  19109660 aggtctatcaaaataacattgacatcccctctatttttaaaacttacaataacctcccttaagtttttataaaat 19109586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 418
Target Start/End: Original strand, 26670623 - 26670768
Alignment:
Q  271 gaaaataacattcacctcttgtgaggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattg 370  Q
    |||||| ||| |||||||   |||||| |||||| |||||||  ||| ||| |||||||| |||||| ||  ||| |||||| | ||| | || |||| |    
T  26670623 gaaaattacactcacctcccttgaggtttattaaaatgacac--acaccccttctagtttcaaaactaacggtaacctccctaatgttctaatgaaatag 26670720  T
Q  371 acaaacacctcccttcactattaacactgttgattttccttcaatttt 418  Q
    ||||||||||||||||  ||||||||| ||| | ||||  ||||||||    
T  26670721 acaaacacctcccttctttattaacaccgttaactttcaatcaatttt 26670768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 7855 - 7926
Alignment:
Q  326 agttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacacctcccttcactattaacac 397  Q
    ||||||||||| |||||||||||| |||||||| | |||||||  |||||||||| ||||  ||||||||||    
T  7855 agttttaaaacctacactaatctctcttaagttctcatcaaatacacaaacaccttccttttctattaacac 7926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 6529 - 6473
Alignment:
Q  322 ctctagttttaaaacttacactaatctcccttaagtttttatcaaattgacaaacac 378  Q
    ||||||||||||||||||||||||   |||||||||| ||||||||| | |||||||    
T  6529 ctctagttttaaaacttacactaacaccccttaagttattatcaaataggcaaacac 6473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 418
Target Start/End: Complemental strand, 171 - 26
Alignment:
Q  271 gaaaataacattcacctcttgtgaggtctattaagatgacactgacatcccctctagttttaaaacttacactaatctcccttaagtttttatcaaattg 370  Q
    |||||| ||| |||||||   |||||| |||||| |||||||  ||| ||| |||||||| |||||| ||  ||| |||||| | ||| | || |||| |    
T  171 gaaaattacactcacctcccttgaggtttattaaaatgacac--acaccccttctagtttcaaaactaacggtaacctccctaatgttctaatgaaatag 74  T
Q  371 acaaacacctcccttcactattaacactgttgattttccttcaatttt 418  Q
    ||||||||||||||||  ||||||||| ||| | ||||  ||||||||    
T  73 acaaacacctcccttctttattaacaccgttaactttcaatcaatttt 26  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University