View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3486_high_2 (Length: 445)
Name: NF3486_high_2
Description: NF3486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3486_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 13 - 428
Target Start/End: Complemental strand, 19057608 - 19057193
Alignment:
| Q |
13 |
aatatcatgatggtgatagtaataggccaactgtaagttgataaacatgatatagctagtattcggattttgatatatttttgtttcaattacgtagaaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19057608 |
aatatcatgatggtgatagtaataggccaactgtaagttgataaacatgatatagctagtattcggattttgatatatttttgtttcaattacatagaaa |
19057509 |
T |
|
| Q |
113 |
tgtttaattaagtatttaactaattatttaatcgcgtgataatatgcgcacatatgcaggcttttcaatttacagggtgtgaaagtctaacaataagcaa |
212 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
19057508 |
tgtttaattaagtatttaactaattatttagtcacgtgataatatgcgcacatatgcaggcttttcaatttatagggtgcgaaagtctaacaataagcaa |
19057409 |
T |
|
| Q |
213 |
cttgaatcacattaacagcccaagaaatcatataagtatagattcatgcaaaaacgcttccatctccaatcttcagataattgctcccgaaaatagtcca |
312 |
Q |
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| T |
19057408 |
cttgaatcacattaacagcccaagaaatcatataagtatagattcatgcaaaaacgcttccatctccaatcttcagataattgcgcccgaaaatagtcca |
19057309 |
T |
|
| Q |
313 |
aacactgatgggattgatatcgcatcttcatccaacatcatcattaataatttatccatcaaaactggttagtataatacataaactcaactttagattt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057308 |
aacactgatgggattgatatcgcatcttcatccaacatcatcattaataatttatccatcaaaactggttagtataatacataaactcaactttagattt |
19057209 |
T |
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| Q |
413 |
cttgatgatcactttt |
428 |
Q |
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| T |
19057208 |
cttgatgatcactttt |
19057193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 198 - 425
Target Start/End: Original strand, 38096661 - 38096888
Alignment:
| Q |
198 |
tctaacaataagcaacttgaatcacattaacagcccaagaaatcatataagtatagattcatgcaaaaacgcttccatctccaatcttcagataattgct |
297 |
Q |
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||||||| | ||||||||||||||||| || || || | |||||||||||| ||||||||||||||||||||||||||| |||| |||| |||| ||| |
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| T |
38096661 |
tctaacacttagcaacttgaatcacatgaatagtccgaagaatcatataagtgtagattcatgcaaaaacgcttccatcttcaatattcatataactgca |
38096760 |
T |
|
| Q |
298 |
cccgaaaatagtccaaacactgatgggattgatatcgcatcttcatccaacatcatcattaataatttatccatcaaaactggttagtataatacataaa |
397 |
Q |
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|| || |||||||| || ||||| ||||||||| || ||| |||||||| ||||| |||| | ||||| |||||||| | |||||||||||| |
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| T |
38096761 |
ccaccaaccagtccaaatacagatggaattgatatctcacagtcaaccaacatcgccattatgaattcaaccatcgaaactggtcattataatacataac |
38096860 |
T |
|
| Q |
398 |
ctcaactttagatttcttgatgatcact |
425 |
Q |
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| T |
38096861 |
ctcaactctacatttcgtgatgatcact |
38096888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 319
Target Start/End: Complemental strand, 21366120 - 21366010
Alignment:
| Q |
208 |
agcaacttgaatcacattaacagcccaagaaatcatataagtatagattcatgcaaaaacgcttccatctccaatcttcagataattgctcccgaaaata |
307 |
Q |
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|||||||||| ||||||||||| ||||| ||| | | || ||||||||||| |||| | ||||||||||| ||| || |||||||||| | ||| ||| |
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| T |
21366120 |
agcaacttgactcacattaacaacccaaaaaag-acacaaatatagattcatacaaatatgcttccatctcaaatatttagataattgcactagaagata |
21366022 |
T |
|
| Q |
308 |
gtccaaacactg |
319 |
Q |
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|||| ||||||| |
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| T |
21366021 |
gtcccaacactg |
21366010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 333
Target Start/End: Original strand, 21551092 - 21551193
Alignment:
| Q |
232 |
ccaagaaatcatataagtatagattcatgcaaaaacgcttccatctccaatcttcagataattgctcccgaaaatagtccaaacactgatgggattgata |
331 |
Q |
| |
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||||| |||||||||||||||||| | |||||| |||| ||| ||||||||||| |||||||| | || ||||||||||| ||||| ||||||| |
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| T |
21551092 |
ccaaggaatcatataagtatagatacttgcaaaggagctttcatttccaatcttcatataattgcagcaccaacaagtccaaacaccgatggaattgata |
21551191 |
T |
|
| Q |
332 |
tc |
333 |
Q |
| |
|
|| |
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|
| T |
21551192 |
tc |
21551193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 329
Target Start/End: Original strand, 32730165 - 32730280
Alignment:
| Q |
214 |
ttgaatcacattaacagcccaagaaatcatataagtatagattcatgcaaaaacgcttccatctccaatcttcagataattgctcccgaaaatagtccaa |
313 |
Q |
| |
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||||| ||||| |||||||| ||||||||||||||||||| |||||| |||||| ||||| |||||||| ||||||||||| | ||||||| | |
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| T |
32730165 |
ttgaaacacatcaacagccccagaaatcatataagtatagtcggatgcaatgacgctttaatctctaatcttcatataattgctccaaaggatagtccca |
32730264 |
T |
|
| Q |
314 |
acactgatgggattga |
329 |
Q |
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|||| ||||||||||| |
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| T |
32730265 |
acaccgatgggattga |
32730280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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