View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3486_high_4 (Length: 349)
Name: NF3486_high_4
Description: NF3486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3486_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 24532233 - 24532561
Alignment:
| Q |
1 |
ttaatggtcaatgtattggaaggtatcggcttggtgaaaattcatcttttaggtattacgcagtgccaaggccattctttaataaagatgtaaacacatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24532233 |
ttaatggtcaatgtattggaaggtatcggcttggtgaaaattcatcttttaggtattacgcagtgccaaggccattctttaataaagatgtaaacacatt |
24532332 |
T |
|
| Q |
101 |
ggtcttgtttgaggaattgggtctgggtgatggccctttcaatgtgtctgtcgacataatcagcatcgaatccagaaattttgttaagtgggatcaaggt |
200 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24532333 |
ggtcttgtttgaggaattgggtctgggtaaaggccctttcaatgtgtctgtcgacataatcagcatcgaatccagaaattttgttaagtgggatcaaggt |
24532432 |
T |
|
| Q |
201 |
tgctcatcatgaatatttatacaaaaatacataaattcataaccaataaatgatgacaccattatgtctatgcaaaacaattagagaaatgtagacactg |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24532433 |
tgctcatcatgaatatttatacagaaatacataaattcataaccaataaatgatgacaccattatgtctatgcaaaacaattagagaaatgtagacacct |
24532532 |
T |
|
| Q |
301 |
taatatcgaatattatgtatgttatcaat |
329 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
24532533 |
taatatcgaatattatgtatgttatcaat |
24532561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 24525561 - 24525890
Alignment:
| Q |
1 |
ttaatggtcaatgtattggaaggtatcggcttggtgaaaattcatcttttaggtattacgcagtgccaaggccattctttaataaagatgtaaacacatt |
100 |
Q |
| |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24525561 |
ttaatggtcaaagtattggaaggtatcagcttggtgaaaattcatcttttaggtattacgcagtgccaaggccattctttaataaagatgtaaacacatt |
24525660 |
T |
|
| Q |
101 |
ggtcttgtttgaggaattgggtctgggtgatggccctttcaatgtgtctgtcgacataatcagcatcgaatccagaaattttgttaagtgggatcaaggt |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24525661 |
ggtcttgtttgaggaattgggtctgggtgaaggccctttcaatgtgtctgtcgacataatcagcatcgaatccagaaattttgttaagtgggatcaaggt |
24525760 |
T |
|
| Q |
201 |
tgctcatcatgaatatttatacaaaa-atacataaattcataaccaataaatgatgacaccattatgtctatgcaaaacaattagagaaatgtagacact |
299 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24525761 |
tgctcatcatgaatatttataaaaaatatacataaattcataaccaataaatgatgacaccattatgtctatgcaaaataattagagaaatgtagacacc |
24525860 |
T |
|
| Q |
300 |
gtaatatcgaatattatgtatgttatcaat |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
24525861 |
ttaatatcgaatattatgtatgttatcaat |
24525890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 290509 - 290821
Alignment:
| Q |
1 |
ttaatggtcaatgtattggaaggtatcggcttggtgaaaattcatcttttaggtattacgcagtgccaaggccattctttaataaagatgtaaacacatt |
100 |
Q |
| |
|
|||| |||||| |||| ||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
290509 |
ttaacggtcaaagtatcggaaggtattggattggtgaaaattcatcttttaggttttacgcagtgccaaggccattcttaaataaagatgtaaacacgtt |
290608 |
T |
|
| Q |
101 |
ggtcttgtttgaggaattgggtctgggtgatggccctttcaatgtgtctgtcgacataatcagcatcgaatccagaaattttgttaagtgggatcaaggt |
200 |
Q |
| |
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|||||||||||| || ||||||| ||||| ||||||||||||||||||||||||||| | |||| |||||||| |||||| |||||||||||||||||| |
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| T |
290609 |
ggtcttgtttgaagagctgggtctaggtgaaggccctttcaatgtgtctgtcgacatagttagcaacgaatccaaaaatttcgttaagtgggatcaaggt |
290708 |
T |
|
| Q |
201 |
tgctcatcatgaatatttatacaaaaatacataaattcataaccaat-aaatgatgacaccattatgtctatgcaaaacaattagagaaatgtagacact |
299 |
Q |
| |
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||| |||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||| | || | |||| |||||||||||||||||||| |
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| T |
290709 |
tgcatatcatgaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctttaagaaaaataattagagaaatgtagacacc |
290808 |
T |
|
| Q |
300 |
gtaatatcgaata |
312 |
Q |
| |
|
|||||||||||| |
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|
| T |
290809 |
ttaatatcgaata |
290821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 280207 - 280266
Alignment:
| Q |
63 |
gtgccaaggccattctttaataaagatgtaaacacattggtcttgtttgaggaattgggt |
122 |
Q |
| |
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||||||||| ||||||| ||||| ||||||||||| ||||| |||||||||||| ||||| |
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| T |
280207 |
gtgccaaggtcattcttaaataatgatgtaaacacgttggttttgtttgaggaaatgggt |
280266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 6015876 - 6015796
Alignment:
| Q |
170 |
atccagaaattttgttaagtgggatcaaggttgctcatcatgaatatttatacaaaaatacataaattcataaccaataaa |
250 |
Q |
| |
|
|||||||||||| |||||||| |||| ||| | ||||| |||||||||||||||||| ||||||| |||||||||||| |
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| T |
6015876 |
atccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaatttataaccaataaa |
6015796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 12252608 - 12252528
Alignment:
| Q |
170 |
atccagaaattttgttaagtgggatcaaggttgctcatcatgaatatttatacaaaaatacataaattcataaccaataaa |
250 |
Q |
| |
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|||||||||||| |||||||| |||| ||| | ||||| |||||||||||||||||| ||||||| |||||||||||| |
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| T |
12252608 |
atccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaatttataaccaataaa |
12252528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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