View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3486_high_5 (Length: 315)

Name: NF3486_high_5
Description: NF3486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3486_high_5
NF3486_high_5
[»] chr3 (4 HSPs)
chr3 (1-315)||(42232503-42232817)
chr3 (36-111)||(42232755-42232830)
chr3 (91-121)||(42232889-42232919)
chr3 (150-180)||(42232899-42232929)
[»] chr4 (3 HSPs)
chr4 (18-315)||(34823223-34823511)
chr4 (34-120)||(34823143-34823229)
chr4 (36-120)||(34823193-34823277)
[»] chr8 (3 HSPs)
chr8 (40-315)||(28945882-28946148)
chr8 (36-120)||(28945830-28945914)
chr8 (40-120)||(28945786-28945866)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 42232817 - 42232503
Alignment:
Q  1 tctccatcatcaacgcgctcttctgttaacttgttcttttctttatcttctccatcaccaacatgctcttctggtaacttgtcctttttattaccatctc 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42232817 tctccatcatcaacgtgctcttctgttaacttgttcttttctttatcttctccatcaccaacatgcccttctggtaacttgtcctttttattaccatctc 42232718  T
Q  101 catcaccaacacactcttcctccaatttctctgtttcttgagcatcatgacaattctctttaccatctccatcaccaacaatctctcccagcaatttcct 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  42232717 catcaccaacacactcttcctccaatttctccgtttcttgagcatcatgacaattctctttaccatctccatcaccaacaatctcttcccgcaatttcct 42232618  T
Q  201 cttccccttagcaccacccctcgttttcttattctcaacattctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42232617 cttccccttagcaccacccctcgttttcttattctcaacattctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatg 42232518  T
Q  301 ttccttgttatcctc 315  Q
    |||||||| ||||||    
T  42232517 ttccttgtcatcctc 42232503  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 42232830 - 42232755
Alignment:
Q  36 cttttctttatcttctccatcaccaacatgctcttctggtaacttgtcctttttattaccatctccatcaccaaca 111  Q
    ||||| |||||||||||||||| |||| |||||||||| |||||||| |||||  ||| | |||||||||||||||    
T  42232830 cttttttttatcttctccatcatcaacgtgctcttctgttaacttgttcttttctttatcttctccatcaccaaca 42232755  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 42232919 - 42232889
Alignment:
Q  91 ttaccatctccatcaccaacacactcttcct 121  Q
    |||||||||||||||||||||||||||||||    
T  42232919 ttaccatctccatcaccaacacactcttcct 42232889  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 180
Target Start/End: Complemental strand, 42232929 - 42232899
Alignment:
Q  150 acaattctctttaccatctccatcaccaaca 180  Q
    |||||||||||||||||||||||||||||||    
T  42232929 acaattctctttaccatctccatcaccaaca 42232899  T

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Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 34823223 - 34823511
Alignment:
Q  18 ctcttctgttaacttgttcttttctttatcttctccatcaccaacatgctcttctggtaacttgtcctttttattaccatctccatcaccaacacactct 117  Q
    |||||| ||||| || | ||| |||||||||||||||||||||||| ||||||| |||||||| |||||||  |||         |||||||||||||||    
T  34823223 ctcttccgttaatttctccttctctttatcttctccatcaccaacacgctcttccggtaacttctccttttcttta---------tcaccaacacactct 34823313  T
Q  118 tcctccaatttctctgtttcttgagcatcatgacaattctctttaccatctccatcaccaacaatctctcccagcaatttcctcttccccttagcaccac 217  Q
    ||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||||| ||| || |||| ||||||||||||||||||| ||    
T  34823314 tcctccaatttctccttttcttcagcatcatcacaattctctttaccatctccatcaccaacaatttcttcccgcaacttcctcttccccttagcacaac 34823413  T
Q  218 ccctcgttttcttattctcaacattctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgttatcctc 315  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  |||||||| ||||||    
T  34823414 ccctcgttttctttttctcaacattctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgtcatcctc 34823511  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 34823143 - 34823229
Alignment:
Q  34 ttcttttctttatcttctccatcaccaacatgctcttctggtaacttgtcctttttattaccatctccatcaccaacacactcttcc 120  Q
    ||||| |||||||||||| |||||||||||  ||||||  |||| || |||||||  ||| | ||| | ||||||||||||||||||    
T  34823143 ttcttctctttatcttcttcatcaccaacacactcttcctgtaatttttccttttctttatcttcttcgtcaccaacacactcttcc 34823229  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 34823193 - 34823277
Alignment:
Q  36 cttttctttatcttctccatcaccaacatgctcttctggtaacttgtcctttttattaccatctccatcaccaacacactcttcc 120  Q
    |||||||||||||||| | |||||||||  |||||| | ||| || ||||| |  ||| | |||||||||||||||| |||||||    
T  34823193 cttttctttatcttcttcgtcaccaacacactcttccgttaatttctccttctctttatcttctccatcaccaacacgctcttcc 34823277  T

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Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 40 - 315
Target Start/End: Original strand, 28945882 - 28946148
Alignment:
Q  40 tctttatcttctccatcaccaacatgctcttctggtaacttgtcctttttattaccatctccatcaccaacacactcttcctccaatttctctgtttctt 139  Q
    |||||||||||||||||||||||| ||||||| |||||||| |||||||  |||         |||||||||||||||||||||||||||||  ||||||    
T  28945882 tctttatcttctccatcaccaacacgctcttccggtaacttctccttttcttta---------tcaccaacacactcttcctccaatttctccttttctt 28945972  T
Q  140 gagcatcatgacaattctctttaccatctccatcaccaacaatctctcccagcaatttcctcttccccttagcaccacccctcgttttcttattctcaac 239  Q
     |||||||| ||||||||||||||||||||||||||||||||| ||| || |||| ||||||||||||||||||| ||||||||||||||| ||||||||    
T  28945973 cagcatcatcacaattctctttaccatctccatcaccaacaatttcttcccgcaacttcctcttccccttagcacaacccctcgttttctttttctcaac 28946072  T
Q  240 attctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgttatcctc 315  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  |||||||| ||||||    
T  28946073 attctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgtcatcctc 28946148  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 28945830 - 28945914
Alignment:
Q  36 cttttctttatcttctccatcaccaacatgctcttctggtaacttgtcctttttattaccatctccatcaccaacacactcttcc 120  Q
    |||||||||||||||| | |||||||||  |||||| ||||| || ||||| |  ||| | |||||||||||||||| |||||||    
T  28945830 cttttctttatcttcttcgtcaccaacacactcttccggtaatttctccttctctttatcttctccatcaccaacacgctcttcc 28945914  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 28945786 - 28945866
Alignment:
Q  40 tctttatcttctccatcaccaacatgctcttctggtaacttgtcctttttattaccatctccatcaccaacacactcttcc 120  Q
    |||||||||||| |||||||||||  ||||||  |||| || |||||||  ||| | ||| | ||||||||||||||||||    
T  28945786 tctttatcttcttcatcaccaacacactcttcctgtaatttatccttttctttatcttcttcgtcaccaacacactcttcc 28945866  T

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