View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3486_high_7 (Length: 247)
Name: NF3486_high_7
Description: NF3486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3486_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 5117640 - 5117876
Alignment:
| Q |
5 |
ggagattcgccatctcaatcaacttcagtttctatatatgaaaaataacagcttgagtgggcctattccttcacaagtcttcaacatttcaacattgaaa |
104 |
Q |
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||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5117640 |
ggagattggccatctcaatcaacttcagcttctatttatgaaaaataacagcttgagtgggcctattccttcacaagtcttcaacatttcaacattgaaa |
5117739 |
T |
|
| Q |
105 |
tatttgcgtcttgaactaaattctttctcaggcatgcttccatcaaattttggatttggacttcctaacctacaattcctccaaatgcatggaaacaaat |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5117740 |
tatttgcgtcttgaactaaattctttctcaggcatgcttccatcaaattttggatttggacttcctaacctacaattcctccaaatgtatggaaacaaat |
5117839 |
T |
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| Q |
205 |
ttgttggaaaaattccaaatactatatcctatgcttc |
241 |
Q |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
5117840 |
ttgttggaaaaattccaaatactatatccaatgcttc |
5117876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 5081909 - 5081669
Alignment:
| Q |
1 |
caatggagattcgccatctcaatcaacttcagtttctatatatgaaaaataacagcttgagtgggcctattccttcacaagtcttcaacatttcaacatt |
100 |
Q |
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||||||||||| || |||||||||||||||| ||||| | ||| ||||||||||||||| || |||||||||| || ||||||||||||||||||| |
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| T |
5081909 |
caatggagattggcagtctcaatcaacttcagcttctacaaatgggaaataacagcttgagcggacctattcctttgaaaatcttcaacatttcaacatt |
5081810 |
T |
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| Q |
101 |
gaaatatttgcgtcttgaactaaattctttctcaggcatgcttccatcaaattttggatttggacttcctaacctacaattcctccaaatgcatggaaac |
200 |
Q |
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| T |
5081809 |
ggaatatttgcatcttgaacaaaattctttctcaggcatgcttccatcaaatctgggatttggccttcctaacctacagcaactacacatgtacggaaac |
5081710 |
T |
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| Q |
201 |
aaatttgttggaaaaattccaaatactatatcctatgcttc |
241 |
Q |
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| T |
5081709 |
aagtttgttggaaaaattccaaatagtatatccaatgcttc |
5081669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 5100077 - 5100317
Alignment:
| Q |
1 |
caatggagattcgccatctcaatcaacttcagtttctatatatgaaaaataacagcttgagtgggcctattccttcacaagtcttcaacatttcaacatt |
100 |
Q |
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||||||||||| ||||||||| ||||||||| ||||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
5100077 |
caatggagattggccatctcagtcaacttcaacttctactaatgggaaataacagcttgagtggacctattccttcaaaagtcttcaacatttcaacatt |
5100176 |
T |
|
| Q |
101 |
gaaatatttgcgtcttgaactaaattctttctcaggcatgcttccatcaaattttggatttggacttcctaacctacaattcctccaaatgcatggaaac |
200 |
Q |
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| || |||| |||||| | ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| || | || | |||| |
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| T |
5100177 |
ggaaattttgtatcttgatcaaaattctctctcaggcatgcttccatcaaatttgggatttggacttcctaacctacaacaactagacattttagcaaac |
5100276 |
T |
|
| Q |
201 |
aaatttgttggaaaaattccaaatactatatcctatgcttc |
241 |
Q |
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| ||||||||||| ||||||||||| ||||||| ||||||| |
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| T |
5100277 |
agatttgttggaagaattccaaatagtatatccaatgcttc |
5100317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 14414214 - 14413974
Alignment:
| Q |
1 |
caatggagattcgccatctcaatcaacttcagtttctatatatgaaaaataacagcttgagtgggcctattccttcacaagtcttcaacatttcaacatt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| | ||| ||||||| ||||||||| |||||||||||| || ||||||||||||||||||| |
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| T |
14414214 |
caatggagattggccatctcaatcaacttcagattctacaaatgtggaataacaacttgagtggacctattccttcaaaactcttcaacatttcaacatt |
14414115 |
T |
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| Q |
101 |
gaaatatttgcgtcttgaactaaattctttctcaggcatgcttccatcaaattttggatttggacttcctaacctacaattcctccaaatgcatggaaac |
200 |
Q |
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| || ||||| ||||| || ||||||||||||||||||||||||||||||| | |||||||| ||||||||||||| | | || | ||| |||||||| |
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| T |
14414114 |
ggaaaatttgtttcttggacaaaattctttctcaggcatgcttccatcaaatctcggatttggccttcctaacctacgagtactacgcatgtatggaaac |
14414015 |
T |
|
| Q |
201 |
aaatttgttggaaaaattccaaatactatatcctatgcttc |
241 |
Q |
| |
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|| |||||||||||||||||||||| ||||||| ||||||| |
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| T |
14414014 |
aagtttgttggaaaaattccaaatagtatatccaatgcttc |
14413974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 16884348 - 16884586
Alignment:
| Q |
3 |
atggagattcgccatctcaatcaacttcagtttctatatatgaaaaataacagcttgagtgggcctattccttcacaagtcttcaacatttcaacattga |
102 |
Q |
| |
|
||||||||| || ||||||||||| ||||| ||||| | ||| |||||||||||||||||| | | ||||||| || |||||||||||||||||||| |
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| T |
16884348 |
atggagattggcaatctcaatcaaattcaggttctacaaatgggaaataacagcttgagtggacatgttccttctaaactcttcaacatttcaacattgg |
16884447 |
T |
|
| Q |
103 |
aatatttgcgtcttgaactaaattctttctcaggcatgcttccatcaaattttggatttggacttcctaacctacaattcctccaaatgcatggaaacaa |
202 |
Q |
| |
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|| |||||| |||||| ||||||||| ||||||||||||||||| | ||| | ||| |||| |||||||| |||||| || || ||| | |||||| |
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| T |
16884448 |
aacatttgcatcttgagctaaattctctctcaggcatgcttccacccaatatgggacttggccttcctaatctacaagagctgcacatgtacaaaaacaa |
16884547 |
T |
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| Q |
203 |
atttgttggaaaaattccaaatactatatcctatgcttc |
241 |
Q |
| |
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||||||||| ||||||||||||| ||||||| ||||||| |
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| T |
16884548 |
atttgttgggaaaattccaaatagtatatccaatgcttc |
16884586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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