View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3486_low_1 (Length: 545)

Name: NF3486_low_1
Description: NF3486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3486_low_1
NF3486_low_1
[»] chr5 (1 HSPs)
chr5 (8-527)||(5358118-5358657)
[»] chr3 (2 HSPs)
chr3 (8-302)||(49572881-49573177)
chr3 (8-227)||(3904704-3904923)
[»] chr1 (6 HSPs)
chr1 (121-298)||(48987132-48987309)
chr1 (150-298)||(19870626-19870774)
chr1 (150-296)||(8146150-8146296)
chr1 (183-298)||(25488280-25488395)
chr1 (121-178)||(25487784-25487841)
chr1 (10-75)||(41134733-41134798)
[»] chr7 (5 HSPs)
chr7 (146-298)||(46165573-46165725)
chr7 (121-297)||(46512085-46512261)
chr7 (121-298)||(5959809-5959983)
chr7 (121-298)||(4127798-4127972)
chr7 (150-296)||(28214756-28214902)
[»] scaffold0137 (1 HSPs)
scaffold0137 (8-227)||(11560-11778)
[»] scaffold0402 (1 HSPs)
scaffold0402 (121-298)||(14150-14324)
[»] chr8 (1 HSPs)
chr8 (121-298)||(17939619-17939793)
[»] chr6 (1 HSPs)
chr6 (121-298)||(6827638-6827812)
[»] chr4 (1 HSPs)
chr4 (121-298)||(36383381-36383555)
[»] scaffold0522 (1 HSPs)
scaffold0522 (150-296)||(5632-5778)
[»] chr2 (1 HSPs)
chr2 (121-178)||(29760522-29760579)


Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 8 - 527
Target Start/End: Complemental strand, 5358657 - 5358118
Alignment:
Q  8 agaatatgcaaataaaagcaaaaaagatagagttcttacttcaagaaaatttatgtgctccaaagaggatagacacggtggtgacaaaggtgattacttg 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||  ||||||||||||| |||||||||||    
T  5358657 agaatatgcaaataaaagcaaaaaagatggagttcttacttcaagaatatttatgtgctccaaagagggtagatgcggtggtgacaaacgtgattacttg 5358558  T
Q  108 acaaaagaggctcgagcagaaactagaacaagatgtttagcgcgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactctgtag 207  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5358557 acaaaagaggctcgagcagaaactagaacaggatgtttagcacgtatggttatttcacttgttcggaagattggaaaatacaaggttattgactctgtag 5358458  T
Q  208 cgggacataatcaccttcttctgccagctaagtatgtttatatgattcgctctcatcgacgcatatctgagtcacaaacatcccaaattgtattgctatc 307  Q
    || |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  5358457 cgagacataatcaccttcttctgccagctgagtatgtttatatgatttgctctcatcgacacatatctgagtcacaagcatcccaaattgtattgctatc 5358358  T
Q  308 ac--------------------atatatataatacatgttacttctactattatataggaacaatctccaacaacccatgatggcatacatgcttggaat 387  Q
    ||                    ||||||| |||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||    
T  5358357 acacacacacatatatatatatatatataaaatacatgttacttctactattatgtaggaacaatctccaatagcccatgatggcatacatgcttggaat 5358258  T
Q  388 ggaagccattctggatatggaagtcatgctttgatggcaaatcaaactgagaatgccagtccatatttacctttaagagaagctgataatggaagtttac 487  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||| |||||||||||| |||    
T  5358257 ggaagccattctggatatggaagccatgctttgatggcaaatcaaactgagaatgcaagtccgcatttacctttaagagaagccgataatggaagtctac 5358158  T
Q  488 atgagattaggatcctaacaatggaagtctacatgagatt 527  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  5358157 atgagattaggatcctgacaatggaagtctacatgagatt 5358118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 49573177 - 49572881
Alignment:
Q  8 agaatatgcaaataaaagcaaaaaagatagagttcttacttcaagaaaatttatgtgctccaaagaggatagacacggtggtgacaaaggtgattacttg 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||| ||||||| |||||||||||    
T  49573177 agaatatgcaaataaaagcaaaaaagatggagttcttacttcaagaaaatttgtgtgctccaaagagggtagacgcggtgctgacaaacgtgattacttg 49573078  T
Q  108 acaaaagaggctcgagcagaaactagaacaagatgtttagcgcgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactctgtag 207  Q
    |||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  49573077 acaaaagatgctcgagcagaaactagaacatgatgtttagcacgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactttgtag 49572978  T
Q  208 cgggacataatcaccttcttctgccagctaagtatgtttatatgattcgctctcatcgacgcatatctgagtcacaa--acatcccaaattgtattg 302  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||  | ||||||||||||||||    
T  49572977 cgggacataatcaccttcttctgccagctgagtatgtttatatgattcgctctcattgacacatatctgagtcacaagcatatcccaaattgtattg 49572881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 3904704 - 3904923
Alignment:
Q  8 agaatatgcaaataaaagcaaaaaagatagagttcttacttcaagaaaatttatgtgctccaaagaggatagacacggtggtgacaaaggtgattacttg 107  Q
    |||||||| ||||||||||||||||||| || |||| |||||||||| ||| | |||||  ||||||| || ||  |||| ||||||| | ||  | |||    
T  3904704 agaatatggaaataaaagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggtaaacggggtgttgacaaacgagaccatttg 3904803  T
Q  108 acaaaagaggctcgagcagaaactagaacaagatgtttagcgcgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactctgtag 207  Q
    ||||||||||   |||  ||||| |||||  |||||   || ||||||||||||||||||||||| |||||||| || ||||||||| |||||| |||||    
T  3904804 acaaaagaggggagagtggaaaccagaacgggatgtgatgcacgtatggttatttcacttgatcgaaagattggtaagtacaaggttgttgactttgtag 3904903  T
Q  208 cgggacataatcaccttctt 227  Q
    |   ||||||||| ||||||    
T  3904904 ctcaacataatcatcttctt 3904923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 121 - 298
Target Start/End: Original strand, 48987132 - 48987309
Alignment:
Q  121 gagcagaaactagaacaagatgtttagcgcgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactctgtagcgggacataatca 220  Q
    |||||||||| |||||| ||||   ||||||||||||||||||||||||||| ||||| || ||||| |||||| |||||| || | |   |||||| ||    
T  48987132 gagcagaaaccagaacaggatgcacagcgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaatctcaacataacca 48987231  T
Q  221 ccttcttctgccagctaagtatgtttatatgattcgctctcatcgacgcatatctgagtcacaaacatcccaaattgt 298  Q
    ||||||  | ||| || |||||||| ||||||||||||| ||||||| |||||||||| ||||| |||| ||||||||    
T  48987232 ccttctggttccacctgagtatgttcatatgattcgctcccatcgacacatatctgaggcacaagcatcacaaattgt 48987309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 150 - 298
Target Start/End: Original strand, 19870626 - 19870774
Alignment:
Q  150 cgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactctgtagcgggacataatcaccttcttctgccagctaagtatgtttata 249  Q
    ||||||||||||||||||||||| ||||| || ||||| |||||| |||||| || |||   |||||| ||||||||  | ||| || |||||||| |||    
T  19870626 cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttctggttccacctgagtatgttcata 19870725  T
Q  250 tgattcgctctcatcgacgcatatctgagtcacaaacatcccaaattgt 298  Q
    |||||||||| ||||||| |||||||||| ||||| ||||  |||||||    
T  19870726 tgattcgctcccatcgacacatatctgaggcacaagcatcaaaaattgt 19870774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 296
Target Start/End: Complemental strand, 8146296 - 8146150
Alignment:
Q  150 cgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactctgtagcgggacataatcaccttcttctgccagcta-agtatgtttat 248  Q
    ||||||| ||||||||||||||| ||||| || |||||||||||| |||||| ||||   | ||| || ||||||||||  || || | |||||||| |     
T  8146296 cgtatgggtatttcacttgatcgaaagatagggaaatacaaggttgttgactttgtactagaacacaaccaccttcttcaacc-gcaagagtatgttcac 8146198  T
Q  249 atgattcgctctcatcgacgcatatctgagtcacaaacatcccaaatt 296  Q
    ||||||||||||||||| ||||||||||||  |||| |||| ||||||    
T  8146197 atgattcgctctcatcgtcgcatatctgaggtacaagcatcacaaatt 8146150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 298
Target Start/End: Original strand, 25488280 - 25488395
Alignment:
Q  183 aaatacaaggttattgactctgtagcgggacataatcaccttcttctgccagctaagtatgtttatatgattcgctctcatcgacgcatatctgagtcac 282  Q
    ||||| |||||| |||||| || |||   |||||| ||||||||  | ||| || |||||||| ||||||||||||| ||||||| |||||||||| |||    
T  25488280 aaatataaggttgttgactttgaagctcaacataaccaccttctggttccacctgagtatgttcatatgattcgctcccatcgacacatatctgaggcac 25488379  T
Q  283 aaacatcccaaattgt 298  Q
    || |||| ||||||||    
T  25488380 aagcatcacaaattgt 25488395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 25487841 - 25487784
Alignment:
Q  121 gagcagaaactagaacaagatgtttagcgcgtatggttatttcacttgatcggaagat 178  Q
    |||||||||| |||||| ||||   ||||||||||||||||||||||||||| |||||    
T  25487841 gagcagaaaccagaacaggatgcacagcgcgtatggttatttcacttgatcgaaagat 25487784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 41134733 - 41134798
Alignment:
Q  10 aatatgcaaataaaagcaaaaaagatagagttcttacttcaagaaaatttatgtgctccaaagagg 75  Q
    |||||| |||||||||||||||||||||| |||  ||||||| || |||| | |||||||||||||    
T  41134733 aatatggaaataaaagcaaaaaagatagaattccgacttcaataagatttgtatgctccaaagagg 41134798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 146 - 298
Target Start/End: Original strand, 46165573 - 46165725
Alignment:
Q  146 agcgcgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactctgtagcgggacataatcaccttcttctgccagctaagtatgtt 245  Q
    |||| |||||||||||||||||||||| ||||| || ||||| |||||| |||||| || |||   |||||| ||||||||  | ||| || ||||||||    
T  46165573 agcgtgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttctggttccacctgagtatgtt 46165672  T
Q  246 tatatgattcgctctcatcgacgcatatctgagtcacaaacatcccaaattgt 298  Q
     ||||||||||||| ||||||| |||||||||| ||||| |||| ||||||||    
T  46165673 catatgattcgctcccatcgacacatatctgaggcacaagcatcacaaattgt 46165725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 46512261 - 46512085
Alignment:
Q  121 gagcagaaactagaacaagatgtttagcgcgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactctgtagcgggacataatca 220  Q
    |||||||||| |||||| ||||   | |||||||| |||||||||||||||| ||||| || ||||| ||| || |||||| || |||   |||||| ||    
T  46512261 gagcagaaaccagaacaggatgcacaacgcgtatgattatttcacttgatcgaaagatagggaaatataagtttgttgactttgaagctcaacataacca 46512162  T
Q  221 ccttcttctgccagctaagtatgtttatatgattcgctctcatcgacgcatatctgagtcacaaacatcccaaattg 297  Q
    ||||||||| ||| || |||||||| ||||||||||||| ||||||| ||||| |||| ||||| |||| |||||||    
T  46512161 ccttcttcttccacctgagtatgttcatatgattcgctcccatcgacacatatttgaggcacaagcatcacaaattg 46512085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 121 - 298
Target Start/End: Complemental strand, 5959983 - 5959809
Alignment:
Q  121 gagcagaaactagaacaagatgtttagcgcgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactctgtagcgggacataatca 220  Q
    ||||||||| ||||||  ||||||| |||||||||||||||||||| ||||||||||| |  ||||| || ||| |||||| | |||| | |||||| ||    
T  5959983 gagcagaaattagaacgggatgtttggcgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataacca 5959884  T
Q  221 ccttcttctgccagctaagtatgtttatatgattcgctctcatcgacgcatatctgagtcacaaacatcccaaattgt 298  Q
    |   ||||  || |   || ||||| |||||||||||||||||||||||||||||||  ||||| |||| ||||||||    
T  5959883 cgaacttcaacctg---agcatgttcatatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattgt 5959809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 298
Target Start/End: Original strand, 4127798 - 4127972
Alignment:
Q  121 gagcagaaactagaacaagatgtttagcgcgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactctgtagcgggacataatca 220  Q
    ||||||||| ||||||| ||||||| ||| |||||||||||||||| ||||||||||| |  ||||| || ||| |||||| | |||| | |||||| ||    
T  4127798 gagcagaaattagaacaggatgtttggcgtgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataacca 4127897  T
Q  221 ccttcttctgccagctaagtatgtttatatgattcgctctcatcgacgcatatctgagtcacaaacatcccaaattgt 298  Q
    |   |||   | | || || ||||| ||||||||| |||||||||||||||||||||  ||||| |||| ||||||||    
T  4127898 cgaactt---caacctgagcatgttcatatgattcactctcatcgacgcatatctgatacacaagcatcacaaattgt 4127972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 296
Target Start/End: Complemental strand, 28214902 - 28214756
Alignment:
Q  150 cgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactctgtagcgggacataatcaccttcttctgccagcta-agtatgtttat 248  Q
    ||||||| ||||||||||||||| ||||| || |||||||||||| |||||| ||||   | ||| || ||||||||||  || || | |||||||| |     
T  28214902 cgtatgggtatttcacttgatcgaaagatagggaaatacaaggttgttgactttgtactagaacacaaccaccttcttcaacc-gcaagagtatgttcac 28214804  T
Q  249 atgattcgctctcatcgacgcatatctgagtcacaaacatcccaaatt 296  Q
    ||||||||||||||||| ||||||||||||  |||| |||| ||||||    
T  28214803 atgattcgctctcatcgtcgcatatctgaggtacaagcatcacaaatt 28214756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 11560 - 11778
Alignment:
Q  8 agaatatgcaaataaaagcaaaaaagatagagttcttacttcaagaaaatttatgtgctccaaagaggatagacacggtggtgacaaaggtgattacttg 107  Q
    |||||||| ||||||||||||||||||| || |||| |||||||||| ||| | |||||  ||||||| || ||  |||| ||||||| | ||  | |||    
T  11560 agaatatggaaataaaagcaaaaaagatggaattctgacttcaagaagattcacgtgctttaaagagggtaaacg-ggtgttgacaaacgagaccatttg 11658  T
Q  108 acaaaagaggctcgagcagaaactagaacaagatgtttagcgcgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactctgtag 207  Q
    ||||||||||   |||  ||||| |||||  |||||   || ||||||||||||||||||||||| |||||||| || ||||||||| |||||| |||||    
T  11659 acaaaagaggggagagtggaaaccagaacgggatgtgatgcacgtatggttatttcacttgatcgaaagattggtaagtacaaggttgttgactttgtag 11758  T
Q  208 cgggacataatcaccttctt 227  Q
    |   ||||||||| ||||||    
T  11759 ctcaacataatcatcttctt 11778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 121 - 298
Target Start/End: Complemental strand, 14324 - 14150
Alignment:
Q  121 gagcagaaactagaacaagatgtttagcgcgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactctgtagcgggacataatca 220  Q
    ||||||||| ||||||  ||||||| |||||||||||||||||||| ||||||||||| |  ||||| || ||| |||||| | |||| | |||||| ||    
T  14324 gagcagaaattagaacgggatgtttggcgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataacca 14225  T
Q  221 ccttcttctgccagctaagtatgtttatatgattcgctctcatcgacgcatatctgagtcacaaacatcccaaattgt 298  Q
    |   ||||  || |   || ||||| |||||||||||||||||||||||||||||||  ||||| |||| ||||||||    
T  14224 cgaacttcaacctg---agcatgttcatatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattgt 14150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 298
Target Start/End: Original strand, 17939619 - 17939793
Alignment:
Q  121 gagcagaaactagaacaagatgtttagcgcgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactctgtagcgggacataatca 220  Q
    ||||||||| ||||||  ||||||| |||||||||||||||||||| ||||||||||| |  ||||| || ||| |||||| | |||| | |||||| ||    
T  17939619 gagcagaaattagaacgggatgtttggcgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataacca 17939718  T
Q  221 ccttcttctgccagctaagtatgtttatatgattcgctctcatcgacgcatatctgagtcacaaacatcccaaattgt 298  Q
    |   |||   | | || || ||||| ||||||||| |||||||||||||||||||||  ||||| |||| ||||||||    
T  17939719 cgaactt---caacctgagcatgttcatatgattcactctcatcgacgcatatctgatacacaagcatcacaaattgt 17939793  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 298
Target Start/End: Original strand, 6827638 - 6827812
Alignment:
Q  121 gagcagaaactagaacaagatgtttagcgcgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactctgtagcgggacataatca 220  Q
    ||||||||| ||||||  ||||||| |||||||||||||||||||| ||||||||||| |  ||||| || ||| |||||| | ||||   |||||| ||    
T  6827638 gagcagaaattagaacgggatgtttggcgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagcttaacataacca 6827737  T
Q  221 ccttcttctgccagctaagtatgtttatatgattcgctctcatcgacgcatatctgagtcacaaacatcccaaattgt 298  Q
    |   |||   | | || || ||||| |||||||||||||||||||||||||||||||  ||||| |||| ||||||||    
T  6827738 cgaactt---caacctgagcatgttcatatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattgt 6827812  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 298
Target Start/End: Original strand, 36383381 - 36383555
Alignment:
Q  121 gagcagaaactagaacaagatgtttagcgcgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactctgtagcgggacataatca 220  Q
    ||||||||| ||||||  ||||||| |||||||||||||||||||| ||||||||||| |  ||||| || ||| |||||| | |||| | |||||| ||    
T  36383381 gagcagaaattagaacgggatgtttggcgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataacca 36383480  T
Q  221 ccttcttctgccagctaagtatgtttatatgattcgctctcatcgacgcatatctgagtcacaaacatcccaaattgt 298  Q
    |   |||   | |  | || ||||| |||||||||||||||||||||||||||||||  ||||| |||| ||||||||    
T  36383481 cgaactt---caacatgagcatgttcatatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattgt 36383555  T

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Target: scaffold0522 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 296
Target Start/End: Original strand, 5632 - 5778
Alignment:
Q  150 cgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactctgtagcgggacataatcaccttcttctgccagcta-agtatgtttat 248  Q
    ||||||| ||||||||||||||| ||||| || |||||||||||| |||||| ||||   | ||| || ||||||||||  || || | |||||||| |     
T  5632 cgtatgggtatttcacttgatcgaaagatagggaaatacaaggttgttgactttgtactagaacacaaccaccttcttcaacc-gcaagagtatgttcac 5730  T
Q  249 atgattcgctctcatcgacgcatatctgagtcacaaacatcccaaatt 296  Q
    ||||||||||||||||| ||||||||||||  |||| |||| ||||||    
T  5731 atgattcgctctcatcgtcgcatatctgaggtacaagcatcacaaatt 5778  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 29760522 - 29760579
Alignment:
Q  121 gagcagaaactagaacaagatgtttagcgcgtatggttatttcacttgatcggaagat 178  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  29760522 gagcagaaattagaacaggatgtttggcgcgtatggttatttcacttgatcagaagat 29760579  T

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